CI01000006_01864365_01882955


Basic Information

Item Value
gene id CI01000006_01864365_01882955
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1864365 ~ 1882955 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_01864365_01882955.mRNA
ATGTCGGGACAGTCCATCACGGACCGGATCGCCGCGGCTCAGCACAGCATGACCGGATCTGCCATCAGCAAAGCCGTGTGCAAGGCCACTACGCACGAAGTCAGCGCGCCCAAGAAGAAGCACCTTGATTATCTAATGCACTGCACCAATGAGCTGAACGTGAATATACCTCACTTGGCTGACACATTGTTTGAGAGGACAGCAAATCAAAGCTGGGTGGTGGTCTTTAAAGCTCTCATTACTACACACCACCTTATGATGTACGGCAATGAGAGGTTTATCCAGTACCTTGCATCAAGAAGCACACTCTTTAACTTGAATAACTTCGTAGATAAAGGCGCATTACAAGGTTACGATATGTCCATCTACATTAGACGTTACAGCAGGTATCTGACTGAGAGGGCTCTGTCCTACAGACTCGTCGCAGTTGATTTCACCAAGATGAAGAGAGGGACTGATGGAGTGATGCGCACTATGAGCATAGAAAAGCTGATGAAGACTCTACCTATCATTCAGAATCAGCTGGATGCTCTTCTGGACTTTGAGGCCAGCTCTAATGAACTGACCAATGGGGTGATCAACTGTGCCTTCACGCTGCTCTTCAAGGACTCTATCCGCATCTTTGCTGCTTACAATGAGGGTGTCATTAATCTGCTAGAGAAATATTTTAATATGAAGAAGAATCAATGCAAAGAGGCGCTGGAAATATACAAGAGGTTTCTTATCAGGATGACCAAGCTCTCAGAGTTTCTCAAGGTGGCAGAGCAAGTTGGAATTGATCAGGTTGACATCCCAGATCTCTCACAGGATAGGGGCCTCAAGAAACTTACTCCATACCCGCGCACTCCCAAGGAATCAGATGTGCTGTTTTGCATTTTCTGTTGTCGCCAGAGGGAGGTGGAGGGTGACAGACTACAGCCTGCAAAGTCTGTTCAGCTCAAAGACATTGGCTTGCAGACCCCAACAGTATCCCCCAGCGGGCAGTCTGTGGGCAGTGCCAACAGTAGCTGCACCAGCAGCGGTGCCACCGAGCTTCTGTCCAGTCCACCTGATCTAACCATCACAAACGGTGTGCACAACTTCACCAATGACCATTTTGATCTCCAACACAATTCCAGTACTCCTACTCAGACAACCACCCTGCCAGCCACTAACAACAGCTGGGGAGGAGGACTTTTGAAGCCCACCCTCTCCTCGCAGGTCCAAAGTCAAGGCACACAGCTCTACAATGGAGGAAAATTACTTACTAACGATCTGGATTCGTCCTTGGCCAATCTTGTGGGCAATTTACATTTTGGAGGACCCCCAGCCAAAAAGCCAGAAGTTCAATGGACTCATTTGGAAAAGAAAGCAACTGGAGGTTCCCACTGGCAGTCTAAAGCCATGAATGGGACGGCACCCTGGAGCCACACACACCTGGCCCCTGCTCCCATACCGATGCCACAGATGGCACCAGCTCCGGTTGCATTTCCGATGACAACCCCCCAAGTGCCTGTGTATGGGATGATTCCTCCTCCTGTGGGGCAGATGGGGTCAATGCCCTTGATGGCCCCCCAGCCTGTGATATATAACCAGCCCATCCTCCGCACCACCAATCCTTTCACCCCAATCCCTGGAGCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_01864365_01882955.mRNA True 1623 mRNA 0.50 17 1864365 1882955

Neighbor

gene id symbol gene type direction distance location
CI01000006_01825754_01835213 CLCN5, CLCN5A coding downstream 29152 1824926 ~ 1835213 (-)
CI01000006_01806389_01811758 NA coding downstream 52607 1805452 ~ 1811758 (-)
CI01000006_01790786_01803089 TRPC2A, TRPC2B coding downstream 61276 1789199 ~ 1803089 (-)
CI01000006_01741474_01759775 NA coding downstream 103262 1741014 ~ 1761103 (-)
CI01000006_01695152_01695781 RHOGB, RHOG, RHOG.S coding downstream 168584 1695145 ~ 1695781 (-)
CI01000006_01884281_01887304 RAB38C coding upstream 876 1883831 ~ 1888374 (-)
CI01000006_01897638_01904724 SLC7A3A coding upstream 14561 1897516 ~ 1904770 (-)
CI01000006_01923864_01927117 SNX12.L, SNX12 coding upstream 40758 1923713 ~ 1927657 (-)
CI01000006_01990505_01991683 FOXI3A coding upstream 107102 1990057 ~ 1991779 (-)
CI01000006_02000378_02005713 NA coding upstream 117423 2000378 ~ 2006213 (-)
G42714 NA non-coding downstream 23556 1840476 ~ 1840809 (-)
G42692 NA non-coding downstream 75731 1785501 ~ 1788634 (-)
G42693 NA non-coding downstream 80299 1783205 ~ 1784066 (-)
G42694 NA non-coding downstream 87227 1776685 ~ 1777138 (-)
G42691 NA non-coding downstream 102858 1761167 ~ 1761507 (-)
G42721 NA non-coding upstream 33333 1916288 ~ 1916496 (-)
G42739 NA non-coding upstream 86599 1969554 ~ 1969779 (-)
G42744 NA non-coding upstream 93732 1976687 ~ 1977230 (-)
G42759 NA non-coding upstream 157144 2040099 ~ 2095847 (-)
G42808 NA non-coding upstream 275137 2158092 ~ 2160200 (-)
G42285 NA other downstream 1508226 355813 ~ 356139 (-)
G42667 NA other upstream 6033 1888988 ~ 1890756 (-)
CI01000006_02285649_02294759 NA other upstream 401877 2284994 ~ 2296494 (-)
G42934 NA other upstream 685958 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 686819 2624436 ~ 2626776 (-)
G43102 NA other upstream 1025496 2908451 ~ 2933984 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019030 si:ch211-200p22.4 coding NC_007132.7 CM002905.2 30563115 ~ 30583086 (+)