CI01000006_01741474_01759775


Basic Information

Item Value
gene id CI01000006_01741474_01759775
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1741014 ~ 1761103 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_01741474_01759775.mRNA
ACTTTTCAGACGGTCCCTTCAGACGTGTCTCTCCGCCGCCTGCTCATAGAGACCAATTTATATACTGTATTATAAAGCACATTTGAGGACAATTTGGTTGTTGTAGCTCGTTATCTAGGTTACTATGATTGGAAATAGCTGCATTTGTGTTTTAACAACATTTAGCTCACGAGTTATTGATCCGGGAAGTTTGAATCTGGGAATATATCGGCAACTTTACTGAACTCCTTGACTTAAGCACTGACTGCATTTCTATATATTTGAGTCCAACAAGTTCAAACTCTATGAGCCGCGCATTATTTGTGTGCATTGTTAACATATGGAGCTGACTGAAACACTACTGTCGGCCAGCGGGACATTAAAGAGGAAGTGTTCGTCCGAGCTCACAGCAAGATAATATCTTTGCGAGGGAACGCAAAAGATTTGAATTTTTTTTTTCCTCCCATCCCAATTTTTTTCCCACCATCACGTCCCTTTAGGGGCTCCGTAGAAGGTGGACACATTCACTTTGTATATTCAAATAAATGCAGAAATAACTAAATTTATTTAATAAATGTATTGAATGAATGTTTATGAATAAGTACACAAATAAATAATTGAACAAATAAATATACATAAATGAACAAATAAATATAATTTGTATATATTTATTAAATAAAGCTATTTTATTAAATTGTATTATTTTAATTGTTTTATTTAAAATATAGATTTTTTTTGTGTCTGTTGCTGACTCACAAGTCGAGTTTGTGTCTTACCAAGCCAGCACAGTGAGCACATACTGCGGTTTCCTGCTGCTGTAGTGAACTTGGTGAAGTGGCTTCCTGTTAAAATGAGACGAATATACGCTTATAGCGTTGCGTGAGATGAAGTAATTTTTTTTGGCAGGCGACAACCAACAGTAAACTTCTTTGGCAGCCGAAAATAATGCTTTCATATTTGATGTCAGGAACTAAGACACATTAGAGCCAACCATAATCTGTCGCAATAGCGTATAGACACAATACCTGCCAATAAACAAAGATAGAGAAAGACTGAAAGCTAAAGATATACCCTAATAAACACCAAAAAGGATGGAGGATGGGAATGACCAGCAGTGGTCCTAGGAGTGGTATTATTTGCGAGTTTACCTGCAGGAGGTGAGCTCTGTGTGCGGAACAGACACCGGCGCCTCCCTTCATCGACTGTTCCTCCCTCCCCCAACCAACAACATGGATCATCGCAGTCCACCTGCGCTTTGTAGTCAAGATTACTCTATTTTTATTCCTAAGTCATCTATGTAAGGTCTCTAGAACACTACAGTCTGTTTTAAGAGTCAACCAGGGTTCTCGATGAAACCATTAAGTGAACAATGTAGCGAGCATCAGAAGAAAAACGCTGGGGAGATGCCGAGTGAGGAGGCGAGGACAGCACCTGGAAACGGTGCGACTGTGAACGCAGCACCTACAAGAGAGAGTCCAGCACAGCAAAACGGGATTGTGTCTTCTCATGATGTCATCAGCCCTGTATCCCAGTCCCAAACTGAGCACCAGCTTCCATCCATTGCACCAGCTTCTCCAGCTCAACCTCCCAGAGAACAGTGGGGCGGCAAATATGAATTTCTTCTCTCCTGTATTGGCTACTGTGTTGGCCTGGGAAATGTCTGGAGGTTCCCCTACCTCTGCTACAGAAATGGAGGAGGTGTGTTTCTCATCCCGTACTTCATCATGCTCTTCTTCACGGGAATGCCTCTCTTCCTCATGGAGCTCAGCCTGGGCCAGTATGGAGCCGCGGGTCCCATCACCGTCTGGAAGTGCTGTCCCCTCCTAAAAGGGATTGGCATAGGGATGCTGTGTGTGTCCATTCTTGTGTGTCTCTATTATAATGTCATTATCGCTTGGACGTTCTACTACCTGGGCAGCTCTTTCCAGAGTCCTCTGCCCTGGTCATGTGATGCTCCTCATAACATTGCCTTTTGTAGAAACAAAACTAATGTCACCCAAAGTCCCTCTGAGGTCTTCTGGAATGTGAAGGTTCTGGGTGTGGTGAACAGTGAAGGGCTGCATGATCCCGGTCCAGTGCGTTGGCCTCTAGCTCTCTGTTTGCTGGCTGCCTGGGTCGTCATTTTTCTCTGCATGCTCAAGGGCATTCGCAGCTCTGGCAAGGTGGTGTATGTGACTGCCACCTTCCCCTATTTTGTGCTGCTTGTCCTCATCATCAGAGGGGCCACCCTTGAGGGCTCCTTGAACGGTGTCGCCTTTTACCTCACTCCAAACTGGGTCCATTTGGCTAATGCACAGGTGTGGAATGATGCTGCGTCGCAGATATTTTATTCTTTGGGTATTGGGGTTGGTGGCCTTCTATCAATGGCATCTTACAATAAATTTGACAATAATGTCATCAGGGATACTCTGATTATCACCATAGGGAACTGCGCTACCAGCTTTTTTGCAGGTTTTGCCATTTTCTCTATCCTGGGTCATATGGCTTGGAGGAAGGGAGTGCCCGTGGGTCAGGTGGCAGACACAGAAGCCCTGGCTCTTCTCCCTGGATCAGTGTTTTGGTCCATTCTGTTTTTTCTCATGCTCTTTATGCTGGGAGTGGACACACTGTTCGGGAACATGGAGGGCATCTGTACAGCAGTACTGGATGAGTTTCCTCAGCTCAGATCCAATCTGAAGCACAAGACGCTGTTCCTGGCACTGCTCTGTTTCGCCTTCTATCTGATGGGCCTGCTGCTTATCACTGATGGTGGGATATACTGGTTCACGCTCATAGACTCCTTCAGCACTAGCTTTGGTCTCATCATCATTACTCTCTTCATGTGCATTGGCATCTCATTCTTCTATGGGGTGAACCAGTTCTGTCAGGACATTGTGGACATGATCTGTCTTTGTCCGCCCTGGTGCACAAAACTGCTGTGGTACTTTAAAGCCTGCTGGGTGGTGTTCACTCCCTTCCTGCTAACGTTCATCCTGACCTACATCTTCATCGAGATGTACCGTACTTCTCTGACCTACGGCTCATACGTGTTTCCGACCTGGGGCAAAGCACTGGGCGTGTGTATGGGTGCCTTCTGCTGTCTGCAGATTCTTATCTGGGCAATTGTGGCTGTCAGTAAAGAGTCTGGCACTCTTAAAGATCGCTTTAAGAAATCCATCCGTCCCCTCAACTCTTGGCGCGTCAACAACATAAACACGGCCACTCAGGAGCAGCATGTGGAGCCCCAGACAGTAGAGGGACCCTTCACGGTTAACCTGACTGAAGCGGACTTCACTGCCATGAACTGGGAGGCCATAAGCGAGGCGTAACACTGCCCCAAGTGTTGGGAGGTGGAACTGCACCCTCTCAAAAGGACAAGTACTGGTGAGGACTTCTGTCTGGAGAATGGTACACTCTTCCTCGCCAGTCCAGCTGTACTGAAATGATGTCACTGACTTGTAGGAAAGTTTTTTTTTCTTTTTTTTAATTTATGACAATGTTACTCATTTGAAATAATACTGGGCCTAAGGCCAAAGCCAGAGACTGAGAAACACAAAAGACATTTGGTTTCTTTGGTTGAATACTTGATGTCCTAAGGATTCCATTTCATGCCATTCACCTAGTCTTCTCATCAAAGAGTGTAAAGACTTATTTTATAAGGTAACAGACTAAGTAACATGATCTGTTTTTCTTTACAGTACATAAGAGCCAGGTCAAATCAAATCAGGACAATTCCTTTTAGAGACGTGATAATATAGATAGAATAGTAACTATTCACATGAAAATAAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05038 SLC6A5_9, GLYT; solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_01741474_01759775.mRNA True 3747 mRNA 0.45 15 1741014 1761103

Neighbor

gene id symbol gene type direction distance location
CI01000006_01695152_01695781 RHOGB, RHOG, RHOG.S coding downstream 45233 1695145 ~ 1695781 (-)
CI01000006_01597661_01606545 ST6GAL1 coding downstream 134098 1597378 ~ 1606916 (-)
CI01000006_01531182_01543508 NA coding downstream 197506 1530981 ~ 1543508 (-)
CI01000006_01368608_01388697 NA coding downstream 352317 1368608 ~ 1388697 (-)
CI01000006_01164852_01247197 TENM2 coding downstream 493817 1164504 ~ 1247197 (-)
CI01000006_01790786_01803089 TRPC2A, TRPC2B coding upstream 28096 1789199 ~ 1803089 (-)
CI01000006_01806389_01811758 NA coding upstream 44349 1805452 ~ 1811758 (-)
CI01000006_01825754_01835213 CLCN5, CLCN5A coding upstream 63823 1824926 ~ 1835213 (-)
CI01000006_01864365_01882955 NA coding upstream 103262 1864365 ~ 1882955 (-)
CI01000006_01884281_01887304 RAB38C coding upstream 122728 1883831 ~ 1888374 (-)
G42658 NA non-coding downstream 9687 1702230 ~ 1731327 (-)
G42661 NA non-coding downstream 59992 1680160 ~ 1681022 (-)
G42618 NA non-coding downstream 67931 1592345 ~ 1673083 (-)
G42623 NA non-coding downstream 98611 1595115 ~ 1642403 (-)
G42612 NA non-coding downstream 154165 1579447 ~ 1586849 (-)
G42691 NA non-coding upstream 64 1761167 ~ 1761507 (-)
G42694 NA non-coding upstream 15582 1776685 ~ 1777138 (-)
G42693 NA non-coding upstream 22102 1783205 ~ 1784066 (-)
G42692 NA non-coding upstream 24398 1785501 ~ 1788634 (-)
G42714 NA non-coding upstream 79373 1840476 ~ 1840809 (-)
G42285 NA other downstream 1384875 355813 ~ 356139 (-)
G42667 NA other upstream 127885 1888988 ~ 1890756 (-)
CI01000006_02285649_02294759 NA other upstream 523729 2284994 ~ 2296494 (-)
G42934 NA other upstream 807810 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 808671 2624436 ~ 2626776 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019034 slc6a7 coding NC_007132.7 CM002905.2 30794351 ~ 30830901 (+)
bowfin (Amia calva) AMCG00016195 LOC106953351,LOC103475760,LOC103145618,LOC106922176,LOC107098229 coding CM030122.1 CM030122.1 11719415 ~ 11729797 (-)