G42612


Basic Information

Item Value
gene id G42612
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1579447 ~ 1586849 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU48357
AGCTGCATGAAGTGCTGAGCAGGAGAAGATCATCATGGTAACAAACTTGCACATTTCGGATGCGGTCTGAAATGACTGTGGAACTCCTGGAGAACATGATATGAAGGTTGAGCACAGTCTGTTTCTACCTGGTGTAGAGGATGAATCTCCGGCAGCTGTCTGAGCGTGGCGGTACAGCACACCTCTCCTAAAAGATGAGTGCGCAAGAAATGGGAAAGTAGTTGATGGACCAAAAAATCTGAATTACGGACCCACATCTTTGCTAACAGCCAATCCGGTGCAGCATCAGACGGCAAGAAAACAGGATTCTGTGGACCAGGAGCCTGTTGAAGCTGAAATATTAAGTTTAAGATTTCAGCTTTCAATAAAATTCAGTCAAAAGAGTTTGCTGACTATTACAATATAAAACCATACTTGTATGGCAATAGGCTTTAGTTCTCCGTGTCTGTTGTAATGCAGCAAACATAAAGGAGCAGACAAGTAGGTCTGTTTCCCATTGACAATATTAGCAGGCAGCTGATCAAGCACTTCATAATCCAGAAGATACACATGTCCTCTCTGTGGAAAATACAAGTTATAAACAACAACAATTGTTACAAAGTCATAAATACAGATGCCCCCAAATTCACACAAACACACCTCCATCTCCTGCTCCAATGATGAGTCCTCTGGTAGAAAAGGTCTGACCATCTCTGAAGTGACAGACAGGTTAGGTGGCAGGTTATGGATCTTTCTGATATACAAAGGGTTGCAACCATTGAGGCACTGATATCCAAAGAACGCATCTTCGTGCCAGTGAGCCTGAACATATCCAGCAACTGTGTTCTCCCTTCCATTGAAAAGGAAGAATGTCTCAAGTTCCTGTAGGCTGCCCCAAGATGTTCTTCTTTCAATAAAACCCTTTATGTAGTGCACATTGTTAACTGGGCTGACAGAAAAAACAGAGTGACAATATCCCACTGTCAATTTTAGTTCAGATGACATAAGAATTAATTCATTAATATCAAACTAGTTTGTAGTGAAGCTTTAATAAAGTGAAACCATACCGTTTACGGATGTAAGTCAAGTTGAGTCCTAGAGATGTCACACTGGACATGTCTACACAGTGAGGACCACCTTCAACAAATGTGCCCCACCTGATTAACTGTTGTTTATGTTGGAGATCCCTCTCCCTGTGATCGGTTAGGATTGCTAATGTTTCCGCCTTTTTCAGACACGCTAAAAGCATTGTGGGAAAGATTGAGAGAATTTGCTATGAGGTAAAGAAAATAAATAAATAAAGAAAGAAAATAAACAGAAACAGCTCACCTTTCTCGTTCCGAAGCTCAACATAACCATCTGCCGTCCTTATCCATTTATGACAAGGAAAAACCTCCATCTCGGGATCCTCAGCACTCCGTCTCACCTGCACATCCTGACAGTGCCAGTCCAGGTCTGGAAAGCCAGGCTGCGCCTCAAGACGGAGTCTCAACAGAACCACTACGCCAACTTCCTCTTTAGGCTTGATGACAACTGTACAGGCCTGTCTCAAAAAGATAAACAGGAAATTTGCATGCATTCATGCTAGATTCATTTTCTATGGGGTCACAGTCCGAAAGAGCGCTGCCATAGTGAATGACTCTGTTAACAGTCAGCTGATATATTACAGTGCACAACATAAATGAGCACACCCCCTCTGAACAAATACAAAAGATGTAATTTCTTTATGATCACTAATACAATTCATGGAAAGATGGCAAAACTAAAATGTATTAAACATATACATAATAAAAACTGAGAAATATGTCATTAAAGAGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTCACCCTCATGTCGTTCCACACCCGTAAGGCCTTC
>TU48358
AGCTGCATGAAGTGCTGAGCAGGAGAAGATCATCATGGTAACAAACTTGCACATTTCGGATGCGGTCTGAAATGACTGTGGAACTCCTGGAGAACATGATATGAAGGTTGAGCACAGTCTGTTTCTACCTGGTGTAGAGGATGAATCTCCGGCAGCTGTCTGAGCGTGGCGGTACAGCACACCTCTCCTAAAAGATGAGTGCGCAAGAAATGGGAAAGTAGTTGATGGACCAAAAAATCTGAATTACGGACCCACATCTTTGCTAACAGCCAATCCGGTGCAGCATCAGACGGCAAGAAAACAGGATTCTGTGGACCAGGAGCCTGTTGAAGCTGAAATATTAAGTTTAAGATTTCAGCTTTCAATAAAATTCAGTCAAAAGAGTTTGCTGACTATTACAATATAAAACCATACTTGTATGGCAATAGGCTTTAGTTCTCCGTGTCTGTTGTAATGCAGCAAACATAAAGGAGCAGACAAGTAGGTCTGTTTCCCATTGACAATATTAGCAGGCAGCTGATCAAGCACTTCATAATCCAGAAGATACACATGTCCTCTCTGTGGAAAATACAAGTTATAAACAACAACAATTGTTACAAAGTCATAAATACAGATGCCCCCAAATTCACACAAACACACCTCCATCTCCTGCTCCAATGATGAGTCCTCTGGTAGAAAAGGTCTGACCATCTCTGAAGTGACAGACAGGTTAGGTGGCAGGTTATGGATCTTTCTGATATACAAAGGGTTGCAACCATTGAGGCACTGATATCCAAAGAACGCATCTTCGTGCCAGTGAGCCTGAACATATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU48357 False 1869 lncRNA 0.34 4 1579447 1586849
TU48358 True 813 lncRNA 0.43 2 1582221 1586849

Neighbor

gene id symbol gene type direction distance location
CI01000006_01531182_01543508 NA coding downstream 35939 1530981 ~ 1543508 (-)
CI01000006_01368608_01388697 NA coding downstream 190750 1368608 ~ 1388697 (-)
CI01000006_01164852_01247197 TENM2 coding downstream 332250 1164504 ~ 1247197 (-)
CI01000006_01007783_01013644 NA coding downstream 564544 1007499 ~ 1014903 (-)
CI01000006_00742547_00743926 ADRA2DB coding downstream 834394 741974 ~ 745053 (-)
CI01000006_01597661_01606545 ST6GAL1 coding upstream 10529 1597378 ~ 1606916 (-)
CI01000006_01695152_01695781 RHOGB, RHOG, RHOG.S coding upstream 108296 1695145 ~ 1695781 (-)
CI01000006_01741474_01759775 NA coding upstream 154165 1741014 ~ 1761103 (-)
CI01000006_01790786_01803089 TRPC2A, TRPC2B coding upstream 202350 1789199 ~ 1803089 (-)
CI01000006_01806389_01811758 NA coding upstream 218603 1805452 ~ 1811758 (-)
G42608 NA non-coding downstream 16196 1562548 ~ 1563251 (-)
G42572 NA non-coding downstream 99877 1432361 ~ 1479570 (-)
G42538 NA non-coding downstream 265538 1300935 ~ 1313909 (-)
G42533 NA non-coding downstream 418245 1156183 ~ 1161202 (-)
G42489 NA non-coding downstream 602402 976832 ~ 977045 (-)
G42618 NA non-coding upstream 5496 1592345 ~ 1673083 (-)
G42623 NA non-coding upstream 8266 1595115 ~ 1642403 (-)
G42661 NA non-coding upstream 93311 1680160 ~ 1681022 (-)
G42658 NA non-coding upstream 115381 1702230 ~ 1731327 (-)
G42691 NA non-coding upstream 174318 1761167 ~ 1761507 (-)
G42285 NA other downstream 1223308 355813 ~ 356139 (-)
G42692 NA other upstream 198652 1785501 ~ 1788634 (-)
G42667 NA other upstream 302139 1888988 ~ 1890756 (-)
CI01000006_02285649_02294759 NA other upstream 697983 2284994 ~ 2296494 (-)
G42934 NA other upstream 982064 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 982925 2624436 ~ 2626776 (-)

Expression


Co-expression Network