CI01000006_01695152_01695781 (RHOGB, RHOG, RHOG.S)


Basic Information

Item Value
gene id CI01000006_01695152_01695781
gene name RHOGB, RHOG, RHOG.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1695145 ~ 1695781 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_01695152_01695781.mRNA
AGAGCATGTGTCTTTTTCTGCAGACTGTTGAAGTCGAGTGGTCACCTTTCTATCATGCAGAGCATCAAGTGTGTGGTGGTGGGGGATGGAGCAGTGGGAAAAACCTGCCTGCTCATCTCGTACACGACTGGCGCGTTCCCCAAAGAGTACATTCCCACTGTGTTCGACAACTATAGCTCCCAAGTCAGCGTGGACAACCGCACTGTCAGCCTCAATCTGTGGGACACAGCAGGCCAGGAGGAGTATGATCGCCTTCGCACGCTGTCCTACCCTCAGACCAACGTCTTCATCATCTGCTTCTCCATCTCCAGCCCCCCGTCCTATGAGAACGTCAAGCACAAGTGGCATCCAGAGGTGACGCACCACTGTCCCAGCGTGCCCATCCTGCTGGTGGGGACCAAGAGCGATCTTCGCAATGACGCGGATGTGCTGAAGAAGCTAAAGGAGCAGAACCAGGCGCCCATCTCACAACAGCAGGGTCACGCTCTGGCTCGCCAAATCCACGCCGTCAAGTACATGGAGTGCTCGGCACTCAGCCAGGACGGCATCAAGGACGTGTTTGCAGACGCAGTGCGTGCCTTCCTCAGTCCTCAGCCTGTGGCTGCCAAGAAGCCCTGTATACTCCTCTGAAAATATA

Function

symbol description
rhogb Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within response to bacterium. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in dorsal aorta; macrophage; somite 3; and somite 4. Orthologous to human RHOG (ras homolog family member G).
rhog Enables GTPase activity. Involved in activation of GTPase activity; cell chemotaxis; and positive regulation of protein localization to plasma membrane. Acts upstream of or within Ras protein signal transduction; actin cytoskeleton organization; and positive regulation of transcription, DNA-templated. Located in extracellular exosome and focal adhesion.

GO:

id name namespace
GO:0009617 response to bacterium biological_process

KEGG:

id description
K07863 RHOG; Ras homolog gene family, member G

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_01695152_01695781.mRNA True 637 mRNA 0.56 1 1695145 1695781

Neighbor

gene id symbol gene type direction distance location
CI01000006_01597661_01606545 ST6GAL1 coding downstream 88229 1597378 ~ 1606916 (-)
CI01000006_01531182_01543508 NA coding downstream 151637 1530981 ~ 1543508 (-)
CI01000006_01368608_01388697 NA coding downstream 306448 1368608 ~ 1388697 (-)
CI01000006_01164852_01247197 TENM2 coding downstream 447948 1164504 ~ 1247197 (-)
CI01000006_01007783_01013644 NA coding downstream 680242 1007499 ~ 1014903 (-)
CI01000006_01741474_01759775 NA coding upstream 45233 1741014 ~ 1761103 (-)
CI01000006_01790786_01803089 TRPC2A, TRPC2B coding upstream 93418 1789199 ~ 1803089 (-)
CI01000006_01806389_01811758 NA coding upstream 109671 1805452 ~ 1811758 (-)
CI01000006_01825754_01835213 CLCN5, CLCN5A coding upstream 129145 1824926 ~ 1835213 (-)
CI01000006_01864365_01882955 NA coding upstream 168584 1864365 ~ 1882955 (-)
G42661 NA non-coding downstream 14123 1680160 ~ 1681022 (-)
G42618 NA non-coding downstream 22062 1592345 ~ 1673083 (-)
G42623 NA non-coding downstream 52742 1595115 ~ 1642403 (-)
G42612 NA non-coding downstream 108296 1579447 ~ 1586849 (-)
G42608 NA non-coding downstream 131894 1562548 ~ 1563251 (-)
G42658 NA non-coding upstream 6449 1702230 ~ 1731327 (-)
G42691 NA non-coding upstream 65386 1761167 ~ 1761507 (-)
G42694 NA non-coding upstream 80904 1776685 ~ 1777138 (-)
G42693 NA non-coding upstream 87424 1783205 ~ 1784066 (-)
G42692 NA non-coding upstream 89720 1785501 ~ 1788634 (-)
G42285 NA other downstream 1339006 355813 ~ 356139 (-)
G42667 NA other upstream 193207 1888988 ~ 1890756 (-)
CI01000006_02285649_02294759 NA other upstream 589051 2284994 ~ 2296494 (-)
G42934 NA other upstream 873132 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 873993 2624436 ~ 2626776 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G142248 NA non-coding CI01000027 null 7335871 ~ 7354238 (-)
rainbow trout (Oncorhynchus mykiss) G1924567 LOC106613190 non-coding NC_048588.1 CM023242.2 32115307 ~ 32117544 (-)
mexican tetra (Astyanax mexicanus) G119726 rhog,LOC107749931,LOC107667433,LOC107673813,LOC107557087,LOC107737593 unknown NC_035910.1 CM008313.1 6288863 ~ 6292980 (+)