RNA id: CI01000006_01695152_01695781.mRNA


Basic Information

Item Value
RNA id CI01000006_01695152_01695781.mRNA
length 637
RNA type mRNA
GC content 0.56
exon number 1
gene id CI01000006_01695152_01695781
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1695145 ~ 1695781 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGCATGTGTCTTTTTCTGCAGACTGTTGAAGTCGAGTGGTCACCTTTCTATCATGCAGAGCATCAAGTGTGTGGTGGTGGGGGATGGAGCAGTGGGAAAAACCTGCCTGCTCATCTCGTACACGACTGGCGCGTTCCCCAAAGAGTACATTCCCACTGTGTTCGACAACTATAGCTCCCAAGTCAGCGTGGACAACCGCACTGTCAGCCTCAATCTGTGGGACACAGCAGGCCAGGAGGAGTATGATCGCCTTCGCACGCTGTCCTACCCTCAGACCAACGTCTTCATCATCTGCTTCTCCATCTCCAGCCCCCCGTCCTATGAGAACGTCAAGCACAAGTGGCATCCAGAGGTGACGCACCACTGTCCCAGCGTGCCCATCCTGCTGGTGGGGACCAAGAGCGATCTTCGCAATGACGCGGATGTGCTGAAGAAGCTAAAGGAGCAGAACCAGGCGCCCATCTCACAACAGCAGGGTCACGCTCTGGCTCGCCAAATCCACGCCGTCAAGTACATGGAGTGCTCGGCACTCAGCCAGGACGGCATCAAGGACGTGTTTGCAGACGCAGTGCGTGCCTTCCTCAGTCCTCAGCCTGTGGCTGCCAAGAAGCCCTGTATACTCCTCTGAAAATATA

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process

KEGG:

id description
K07863 RHOG; Ras homolog gene family, member G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48420 lncRNA downstream 14123 1680160 ~ 1681022 (-) True G42661
TU48367 lncRNA downstream 22062 1592345 ~ 1673083 (-) True G42618
TU48374 lncRNA downstream 52742 1595115 ~ 1642403 (-) True G42623
TU48357 lncRNA downstream 108296 1579447 ~ 1586849 (-) False G42612
TU48358 lncRNA downstream 108296 1582221 ~ 1586849 (-) True G42612
TU48417 lncRNA upstream 6449 1702230 ~ 1731327 (-) True G42658
TU48450 lncRNA upstream 65386 1761167 ~ 1761507 (-) True G42691
TU48460 lncRNA upstream 80904 1776685 ~ 1777138 (-) True G42694
TU48459 lncRNA upstream 87424 1783205 ~ 1784066 (-) True G42693
TU48453 lncRNA upstream 89720 1785501 ~ 1786141 (-) False G42692
CI01000006_01597661_01606545.mRNA mRNA downstream 88229 1597378 ~ 1606916 (-) True CI01000006_01597661_01606545
CI01000006_01531182_01543508.mRNA mRNA downstream 151637 1530981 ~ 1543508 (-) True CI01000006_01531182_01543508
CI01000006_01368608_01388697.mRNA mRNA downstream 306448 1368608 ~ 1388697 (-) True CI01000006_01368608_01388697
CI01000006_01164852_01247197.mRNA mRNA downstream 447948 1164504 ~ 1247197 (-) True CI01000006_01164852_01247197
CI01000006_01007783_01013644.mRNA mRNA downstream 680242 1007499 ~ 1014903 (-) True CI01000006_01007783_01013644
CI01000006_01741474_01759775.mRNA mRNA upstream 45233 1741014 ~ 1761103 (-) True CI01000006_01741474_01759775
CI01000006_01790786_01803089.mRNA mRNA upstream 93418 1789199 ~ 1803089 (-) True CI01000006_01790786_01803089
CI01000006_01806389_01811758.mRNA mRNA upstream 109671 1805452 ~ 1811758 (-) True CI01000006_01806389_01811758
CI01000006_01825754_01835213.mRNA mRNA upstream 129145 1824926 ~ 1835213 (-) True CI01000006_01825754_01835213
CI01000006_01864365_01882955.mRNA mRNA upstream 168584 1864365 ~ 1882955 (-) True CI01000006_01864365_01882955
TU47983 other downstream 1339006 355813 ~ 356139 (-) True G42285
TU48457 other upstream 89720 1785501 ~ 1788634 (-) True G42692
TU48426 other upstream 193207 1888988 ~ 1890756 (-) True G42667
TU48637 other upstream 589051 2284832 ~ 2290690 (-) True G42837
TU48753 other upstream 873132 2568913 ~ 2582206 (-) True G42934
TU48776 other upstream 873993 2569774 ~ 2570203 (-) False G42952

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU161638 True 740 lncRNA 0.50 5 CI01000027 7335871 ~ 7344580 (-)
rainbow trout (Oncorhynchus mykiss) TU2200681 True 1147 lncRNA 0.47 2 NC_048588.1 32115307 ~ 32117544 (-)
mexican tetra (Astyanax mexicanus) TU161638 True 4098 TUCP 0.41 2 NC_035910.1 6288863 ~ 6292980 (+)