G42658


Basic Information

Item Value
gene id G42658
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 1702230 ~ 1731327 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU48417
TCAGATTTAACTCAATGTACCACACTTGTGTGCATGATAAACTCACATTGCAGTGTTCCTGGGGAAAGTATGTCCTCATCCATGTCGTCTAGGTCATCGGAGAGCAGTAGGTGTTGGGGTGTAGCAGAGCGAATGCCCAGGAAAGCAGGGTCCAGGTTGAGGGCAGAGGCCAGAGATGACATGCCAGGGTTATTGACAATGTTATAACCGGTCAGAATCTCAATTTGCTGCCACCGATGGAGCTTTTCTCTCAGAGCAGTGGTCACTTCTCCCAGAGCCTGTCTGGCTGACAGGATTTTGTGATCGACATCGTCCAGTGAAGGGCTGTGGGCCAAGTGGAACGTCCCAAAGATAGTTCCTCTCTTCTTCTTGATCTTTTCTGCCCCTTCTTTAGCCACTGTGAGCTGTCTTTCTGCATTCTGTTTCTTAATGTTGTAGTACTGCACCTCCACCTCGTGTGTGAGCTGCAGCCACTTCTGCAGGGCTTCAGGAGGAGACCAGCCGCTCCTCAACTCCAGCTCCCTCTCAGCCTTCTTCAGAGCCATTCGCACCTGTTCCAGCTCCTGCTCTGCATATGTCTGTCTGCTCAGCTCATTCTCAGTTCCCTCACGCAGTTCTCGCAGTCTCTGAGCCTCCTGCTTGGCTTCGTCAATCTCTCTTTTCATCTGCCGCTCCAGGTTGACCTTCTCCACCTCCACCGAGTGGTGCTCTTCCTGTGCGATCTGCAGCTTCTGCTGCAGGTCCAGGAGGCTCTGCTCAGCTCTCTGAAGCCCTTCTAGGTCCTTCATCATCTGGCCCACGTGGTCCCTAGAATTTCGGTTCTGGATGTAGGCGAACCAGCAGCCCCCCACTGCAACCATGATGGACACCACCAGCATCAAGTCCTTCAAGAAACTGTTTTCGCTTGGTGGTGGTCCAAAAAGCACTGTTTCCAGAGCCTTCAGCTGCAGTTTCTGTGCATGACTGCGGTCTGGTATCTTCAGCACAGACAGAAGAAGGGTGGCATTTTTCACTGCAAGTCTGGGCAGAGCTTTGCCACTGATGTCGTTCTTCCTGAAGGAATCAACATACTGAGGTAACTGCACACAGCTGGCAAGCCACTTCTCTGCTTCCTCTACTGACCAGTTATACACTTCAGAGGCCTTCCAGGAGTTCCACATGTCCTCCACTGTGATCAGCAGATCTGCTCTATGGAATCTCTTGTGTTTTCCTTTAGGGTCGTTGTACTTTAAGTCTTCCCTTAGAAACCCATCCGTTTCTGTCACGTCCACGCTGCCGTCTGCATCATCGTCCATGTCTTTATGAATGCTGCGGATGGCCTCAAAACTTAGCAGAGCGTTTTCATCCTGGCAAAGTAGCTCATCAATACCACATAGTTCGGATAATCCATTGGCAGACTCTAGGTGGTCTGTCAGGCTGTGCTGATCTGCTGCACTCCTCCATAAGAAACCAAGCCATGCAATGAACATACAGTGTCTGGCAAATCTCAATAGATCCATGCTGAACTGTCAAAATCCGAAGGTTGGGAACTGCTGGAGTCGCTTGTGAAAATCAGATGTAAAAGTTTCGTTTGATCTGACTGACATCCATTAGCTAACCGATATTTGTAGGATATTGTTTTAACTCAGATGAGAAAATGTTGTCGTTTTAACGGTCCAGCAAGTTTAAACAACACTTCAAATATGTTTGACATTCATTTTCCACATCTCCTATTCACAGTCTGCGCAATAACACCACCCACCCCGTCAATAATATCAAATATTGTCAAATGTGTCCATCACTCGTTAATACGCGCTTCGAACAAAACGTCCAAAATGAAGAAAGAGTTGTCCTCCAGATGTATGACACAAAAGTATGTCCCGGCTATATATCAAATTTCGAGGTTCATTACATTGTTTCAAAGTCCTCTGTCCTGTTATCCAAAACCCATCGATGTTAAGAATCCGTTTGGTGTTGCTTTTGGAGGATGTCTAATGGTAAAGCAAAGAGTTTCTTGGGATATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48417 True 2005 lncRNA 0.48 11 1702230 1731327

Neighbor

gene id symbol gene type direction distance location
CI01000006_01695152_01695781 RHOGB, RHOG, RHOG.S coding downstream 6449 1695145 ~ 1695781 (-)
CI01000006_01597661_01606545 ST6GAL1 coding downstream 95314 1597378 ~ 1606916 (-)
CI01000006_01531182_01543508 NA coding downstream 158722 1530981 ~ 1543508 (-)
CI01000006_01368608_01388697 NA coding downstream 313533 1368608 ~ 1388697 (-)
CI01000006_01164852_01247197 TENM2 coding downstream 455033 1164504 ~ 1247197 (-)
CI01000006_01741474_01759775 NA coding upstream 9687 1741014 ~ 1761103 (-)
CI01000006_01790786_01803089 TRPC2A, TRPC2B coding upstream 57872 1789199 ~ 1803089 (-)
CI01000006_01806389_01811758 NA coding upstream 74125 1805452 ~ 1811758 (-)
CI01000006_01825754_01835213 CLCN5, CLCN5A coding upstream 93599 1824926 ~ 1835213 (-)
CI01000006_01864365_01882955 NA coding upstream 133038 1864365 ~ 1882955 (-)
G42661 NA non-coding downstream 21208 1680160 ~ 1681022 (-)
G42618 NA non-coding downstream 29147 1592345 ~ 1673083 (-)
G42623 NA non-coding downstream 59827 1595115 ~ 1642403 (-)
G42612 NA non-coding downstream 115381 1579447 ~ 1586849 (-)
G42608 NA non-coding downstream 138979 1562548 ~ 1563251 (-)
G42691 NA non-coding upstream 29840 1761167 ~ 1761507 (-)
G42694 NA non-coding upstream 45358 1776685 ~ 1777138 (-)
G42693 NA non-coding upstream 51878 1783205 ~ 1784066 (-)
G42692 NA non-coding upstream 54174 1785501 ~ 1788634 (-)
G42714 NA non-coding upstream 109149 1840476 ~ 1840809 (-)
G42285 NA other downstream 1346091 355813 ~ 356139 (-)
G42667 NA other upstream 157661 1888988 ~ 1890756 (-)
CI01000006_02285649_02294759 NA other upstream 553505 2284994 ~ 2296494 (-)
G42934 NA other upstream 837586 2523776 ~ 2582206 (-)
CI01000006_02624725_02626124 COX8A other upstream 838447 2624436 ~ 2626776 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019713 stim1b coding NC_007132.7 CM002905.2 30841241 ~ 30935262 (-)