XLOC_019034 (slc6a7)


Basic Information

Item Value
gene id XLOC_019034
gene name slc6a7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30794351 ~ 30830901 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037755
CGAAAATAAAGCGTTCACGTTTGACATCACAGCCGAGACATATTAGGCATATCATATCCTCAACAACAATTGCTGTGGCTGAAAGCTAAATATATTGACTGCTGAATATTAAATAGGAAGGAGGACAGGAATGACCAGCACCGTTTCTAGGAGGGGCATAATTTGCGAGTTTACCTGCAGGAAGGTGAGCTCTGTGCGGAACAGATACCCCGGCGCCTCCCTCGTCGACTGTTTCTGTTTCTCCCTCCCCCATTCAACCGTCAACATGGACCGTACACCTGCACTTTTTACTCAGGATTACTCTTGTATTATAAAATCACCATCTATTTAAGGTCTCGAGAACATCACAGTCTGTTTTAGGAGTCAACCGGTGGTCTCGATGAAACCATTAAGTGAACTATGTAGTGAGCATCTGAAAAAAAGCGCTGCGGAGATGCCGACTGAGGAGGCGAGAACTGCACCTGGAAACGGTGTGATCACAACACCTTCAACAGAGAATCCAGCACATCAGAACGGGGCTGTGTCGTCTCCTGTTGCTTCTCAGTCCCAGCCTCCATCCTCTGCAGCATCTCCTCCTGCTCAGCCTCCCAGAGATCAGTGGGGCGGCAAGTATGAGTTTCTGCTCTCCTGTATCGGCTACTGTGTTGGCCTGGGAAATGTCTGGAGGTTTCCTTACCTCTGCTACCGAAACGGAGGAGGTGTGTTTCTCATCCCGTACTTCATCATGCTGTTCTTCACGGGGATGCCACTGTTCCTCATGGAGCTCAGTCTGGGCCAGTATGGGGCTGCGGGTCCCATAACTGTCTGGAAGTGCTGTCCCCTCCTCAAAGGTATTGGCATAGGGATGCTGTGTGTATCCACTCTCGTGTGTCTCTATTATAATGTCATTATCGCTTGGACCTTCTACTACCTGGGCAGTTCTTTCCAGAGCCCTCTGCCCTGGTCATGTGATGCTCTTCAAAACATCGCCTTATGTGCAAACAAAACTAATTCGACCCAAAGTCCCTCAGAGGTGTTCTGGAAtgagAAGGTTCTGGGTGTGGTACACAGCACAGGACTCAGTGATCCCGGGCCGGTGCGCTGGCCTCTCGCTCTCTGCTTGCTGGCTGCCTGGATCATCATATTCCTCTGCATGCTCAAAGGCATTCACAGCTCCGGCAAGGTGGTGTATGTGACTGCCACTTTCCCATATTTTGTACTGTTGGTCCTCATCATCAGAGGAGCCACCCTTGAGGGCTCCTTAGATGGTGTCGCCTTCTACCTCACTCCTAAGTGGGACCAGCTGGCTGATGCACAGGTGTGGAATGATGCTGCGTCGCAGATCTTCTATTCTTTGGGTATTGGAGTTGGAGGCCTCCTGTCCATGGCTTCTTACAATAAATTTGACAATAATGTCATCAGGGACACTATTATCATCACCATAGGGAACTGTAGCACCAGCTTTTTTGCAGGCTTTGCCATCTTCTCTATCCTCGGTCACATGGCATTTAAGAAGGGCGTTCCTGTGGACAAGGTGGCGGATTCAGGTCCTGGTCTGGCATTTGTTGCCTACCCAGAAGCCCTGGCTCTTCTCCCTGGATCAGTGTTTTGGTCCATTCTGTTTTTCCTCATGCTCTTTATGCTGGGAGTGGACACCTTGTTTGGTAACATGGAGGGCATTTGTACGGCAGTGCTGGACGAGTTTCCTCAGCTCAGGTCCAATCTGAAGCACAAGACGCTGTTCTTGGCAGTGCTCTGCTTCTCTTTCTATCTGATGGGCCTGTTGCTCATCACTGACGGTGGGATATACTGGTTTACGCTCATAGACTCCTTCAGCACCAGCTTTGGTCTCATCATCATTACTCTCTTCATGTGCATTGGCATCTCGTTCTTCTATGGGGTGAACCAGTTCTGTCAGGATATCGTGGACATGATCTGCCGATGTCCTCCCTGGTGCACTAAAATGCTGCTGTACTTCAAAGCCTGCTGGGTAGTTTTCACTCCATTCCTGCTAACGTTCATCCTGACCTATATCTTCATTGAGATGTACCGAACTTCTCTGCGCTATGGCTCATATGTGTATCCGATTTGGGGCAAAGCTCTGGGTGTTTGTATGGGCGCCTTATGCTGCCTGCAGATCCTCATCTGGGCGATCGTGGCCATCAGTAAAGAGTCTGGAACTCTTAAAGATCGCTTTAAGAAATCCATCCGTCCCCTGAACTCGTGGCGTGTGAACAACATAAACTCCAGCTCTCAGGAGCAGCACGTGGAGCCCCACACAATAGAGGGGCCTTTCACAGTTAACCTGACTGAAGCCGACTACACCGGCATGAACTGGGAGGGCATCAGCGAGGCGTAGCGCCGCCACTAATGTTGAGTACTGGAACAGCACTCTCTCAGAAGCACAAGTACTGGTGAGGAGGACTGCTGTACAGAGAACAGTGCACAGCTGGACTGAAACGGTGTTACTTTCTTTGCAGGACACCTAAAACCAtagctttttttatatttatgacaaCATGGCCCATTTGACATCGGGACTAAAAGCCAAAGCAAGAAGCATAAAAGACGTTTGGATTATCTGGCTGAATCCTTGACACCCCGAGATTCCGTTTCATGAAAGAATGTACAAGACTGTTTTATAAGATAACAGACTGTGTAAGTTTatctgttttacatttacattgaaaTGTACAATCATATACAAGAGCAAGGCCAAATCAAATCAGGGCAACATCACAGAGTAGCAAAACTGAAGTCATTTTAGTAGTATGGGCTGAGATTGGACAATTAATCGAAGGTGATTTTCATGCTCATTTTATTAGTAAAGCCGGTTCTAGTATGATCCAGCAGGTGCCTTCAGATGGAGCATCATTTACTACACAAAGCTGATACTGACAGCGTATGCAAAATATTGTTTAGAATCCAAAACAataggggcggcacggtggctcagtgggtagcactgttgcctcacagcaagaaaaagGATGGTTTGAGTGGCCTGACTGGGCCAGGAGGCGTTTtagtgcagagtttgcatgttctccccgtgctctgtgttttccccacagtcctaagacatgcactgtaactgaactggataaacaaaattggcctaaagttggtatgagtgtgtgtgattgtataggtgtttcccagtactgggttgtggcaggaagggcatccgctgcataaaacatatgctggaatagttggtgcttcattctgctgtggcgacctctgaaatagagactaaatcgaaggaaatgaatgaatgaacctaaAACGATCCAAGATGATCAAGTTTGTGTCACTTTGTAGTGATTTACAGCTGTGTGCAGTAAATGCTGCACATGGAAAATACCACATTGTAACACGTTTACACTCGCAAATTCATTTAAGTGTTTTAAAGAGCAGTCTTGTGATTATTAGGCTATGTCCACACATACACGGGTATTTTTATaaatggtattttaaaaaaaggttttgtccGCATGATAACACATTGTGAGGCAAGTAATGGGCACGCCAGACCAACAGGTGGCGATAGTGACACTTGTATACTGAGTTTACATCAAACTAAGTGTATTTTGCTAGTAAATTGcatttaagtcaatgcaaacatgagTATACAGGCGGATTAACGTCCCATGATCAAACAATGCGGAATACGAGATTTCAAGTTCCTTATTCACTACTTTCGTGTTTGGCTTGAAACCCCGCCGTGTTGGCCAACCAGAGAGGAGAAAACAGCATGCACGCTAACATCATGAGGCTAAAACTCTGGTGTTAGCGTCTATACGACCACACTGTACCTtgaaaatcttcaccctggccAGATTCTTCTAAAAGTTGCAATTACTGTGACCTGACACTGCAGTGTCACTGCATTTTTGTGTGGACAAACAGCGAAACTGCATAGAAAAATGTGTGGTTTTGAAAATACCCGTGTTCCTGTGGACAGGGCCTTCGTCAAGCTGAATCAATGATATTGATCAATAATGCAACACTATGCGGATTTCCTTGGTGTCTTTATGTTTGGAGTTTCCACATGAGAGCGTCCTCTGTCCTTCGGTAGGAGATTTACTAGTAAACACACAACCGTGCTTTCCTATCTAGATGTGCATGATCAATcgcattttacatttaatttcgaTGAGTTGCCCAGTCCTAGAAAAGGCCCGACATGCCAAGGAACATGAAGATGTagaaatatgaatgtaaaacaaTGTCACAGAAATCATTTTCATAAAACATTTTCCAGATAATAAACACAGAAATATCTGTGCATTTGAAGTTACAGACTTCAAAACTGCAACATGCATATATTAAACAGTATGAAATCTT

Function

symbol description
slc6a7 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A7 (solute carrier family 6 member 7).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
ko04721 Synaptic vesicle cycle
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070112-1492 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A7 (solute carrier family 6 member 7).

Ensembl:

ensembl_id ENSDARG00000030006

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037755 True 4329 mRNA 0.46 15 30794351 30830901

Neighbor

gene id symbol gene type direction distance location
XLOC_019033 trpc2b coding upstream 28818 30746348 ~ 30765533 (+)
XLOC_019032 zgc:110224 coding upstream 51499 30721733 ~ 30742852 (+)
XLOC_019031 clcn5a coding upstream 97756 30662263 ~ 30696595 (+)
XLOC_019030 si:ch211-200p22.4 coding upstream 211265 30563115 ~ 30583086 (+)
XLOC_019029 rab38c coding upstream 233861 30549512 ~ 30560490 (+)
XLOC_019035 rhogb coding downstream 106789 30937690 ~ 30951909 (+)
XLOC_019036 st6gal1 coding downstream 319537 31150438 ~ 31184035 (+)
XLOC_019037 asl coding downstream 422147 31253048 ~ 31277336 (+)
XLOC_019038 TENM2 coding downstream 603350 31434251 ~ 32008843 (+)
XLOC_019039 NA coding downstream 904288 31735189 ~ 31737398 (+)
XLOC_019021 NA non-coding upstream 608030 30184309 ~ 30186321 (+)
XLOC_019020 NA non-coding upstream 610797 30163899 ~ 30183554 (+)
XLOC_019017 NA non-coding upstream 766722 30022933 ~ 30027629 (+)
XLOC_019015 CU855895.2 non-coding upstream 807455 29986796 ~ 29986896 (+)
XLOC_019014 CR847571.3 non-coding upstream 1187901 29606327 ~ 29606450 (+)
XLOC_019040 CABZ01006935.1 non-coding downstream 1199735 32030636 ~ 32030752 (+)
XLOC_019041 NA non-coding downstream 1214523 32045424 ~ 32070143 (+)
XLOC_019042 NA non-coding downstream 1247156 32078057 ~ 32099320 (+)
XLOC_019044 NA non-coding downstream 1575862 32406763 ~ 32411647 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_01741474_01759775 NA coding CI01000006 null 1741014 ~ 1761103 (-)