XLOC_019151 (ccdc82)


Basic Information

Item Value
gene id XLOC_019151
gene name ccdc82
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 40685895 ~ 40709239 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037926
ATTGGCGCGTGTCGCTGGCTGGAGCAGAATGATACATATTTATTCAAATCATCattgaaatattaattaaaacattagattgtttttatttttatctgcaCGCTTGGATTAATGAGTCGTTGTGACAAAAAAATAGCCGAATAATCACCCACGCGACGGGAATGTAATTTGACAGCACGAGCGCGCAGCAtcctgttgctgaccatgtagaTTGGCAACAACAGCTTTGTTTTAAAGAATACAGCAACATTTCTCGTTGTAATTAGGGTCACTTTTGCATCGCCGCAAAAATGATGAAAAGCGTGGGAAAGCATTTTGGGTTGAGGCGAAAATGTGCGCCCCCAAAATCTCGCATTGACAAGAAAAAGACTCGCGTGAACCCCATCGACACCATGCTGGATGACAGCGACGAGGGCTCGTTCGGCGGCAGCACCACCAGCGTCAGCTCCGAGAGCGAGTACCACAACTCCGAGCAGGAGTCCGGGACATCCGACAGCTCATACCGGGCGCGGGAGAGCGATGCCGACGACAGCAGCGACACCGATGAGAGGCGCGCAGTGTCCCGCCGGCAGAAGAAGAGAACCGTCAGCGCACCGGCTCCAGACGAGgactccagcagcagcagcagcagcgcctccagattgagCAGCAGCAGCGACTCCTCCAGTGACGTGGGCGGAGAGCCGCTCCGGAGGGTCCTGCAAAGGAAGAGGCTCCGGCTGCCGGAGGACTCAGAGGATGAGGCTCTGAAAAAGAAGAAGAGGGAGGCGGAGATCAAGGAAGCTGCTGCCAAGAGAAGAGAGAGGAAGAATAAACTCATGGAGCTGTCGAAGAAGAGAAAGTCAGGCACCCCGCGGCGCAGGCGCAGGACAATGGGTTCAGACGAtgatgaggaggaagaggaagagaagaAAGAGGTGGTCAAGGAAGTCAAAGTTGAAGAGCCGAGTAAAGCAGATGATTCAGATGAAGACTCCACTGTGGAGGAGAACGCCAGTCCTCTGAACAGCAGCGACGAGGAGAAACTGGCTCATAGCAGTGACAGTATGAAGGATTTCATTGTGGAGGAGGATCAGAAGAAGGATGACGAGCAGGAGGGAGACGAGGACGCCAAAGACAAGATCCTCTCTCAGCTTCCACGCCAGTTCATCACAGGATCTCAGCTCAGCCACTTTCAGCTGGTGGTCAAAGCCTTGCTGATCAATGTACTGGACTCCACCTTCCTCAAGTCACTTTACAGTGGCGAACGAACAAAGCGATACGCCCAGGAGATGAAAACATCATTGCTTCATTTTGATGAGCGAATGGTTCTTCCTCGCTTGGAGAACCTGAAGCAGAGGAGCCGCTGGAAAGACCgctataaaGAGAGAGTAGAATGCTATCCGAAACTGCGGGTGGTGACGACAAGAACTCAGATGAAGGGTTGTGAAGCCTGCGAGCTTCACAGAACGGGCCGCTTCACGGTTCGTCTCTCTGGACAGTTGTACCACTGCGAGTCCCTGCAGGAGGACACGTTCATGCCTGACGATTCACAGAGTTTCTTTGTGGGCTCTGTCTGTGCCAGTCGTACGGAGGTCTACCATGCCTTGAAGCACTTTAAATACCATCTGTTTGAGAAGTGCCGTAAAACTATTGAAACTCGAAAGGAAATACAGGAAGGGGAAACGGGAGAGGACGATGAACCAGTCAAGGACACGGTCAACAAGGCCTTCACCAAACTGCAGGATGATGGCTGGATCAAGGAGCAATACGACGAGTTTCAAGAGCATCTCAATGCTGCCGATTTCTTCCAAGAAGAAAAGCTGGACTGAAAGGTTTTGAACTTGCCCTAAGGGCATCAGTCtgttgttttatttctgtaaatatgtatagttttgtcattttaaagcaTGTTTAACTTTTGAGTTGTTCACAAGTGTGTCCTTCAGATCCAGCATTTCATATCCTCACTGCTTTGTCACTTGCTTCAGCATGGCTGATACTGAATACAGTTCACATTTACAGAGCTACAACCCAAATTGTAaccattacttttttaaaaatcctgatgagttaaaactgt
>TCONS_00037927
GGGTTCAGACGAtgatgaggaggaagaggaagagaagaAAGAGGTGGTCAAGGAAGTCAAAGTTGAAGAGCCGAGTAAAGCAGATGATTCAGATGAAGACTCCACTGTGGAGGAGAACGCCAGTCCTCTGAACAGCAGCGACGAGGAGAAACTGGCTCATAGCAGTGACAGTATGAAGGATTTCATTGTGGAGGAGGATCAGAAGAAGGATGACGAGCAGGAGGGAGACGAGGACGCCAAAGACAAGATCCTCTCTCAGCTTCCACGCCAGTTCATCACAGGATCTCAGCTCAGCCACTTTCAGCTGGTGGTCAAAGCCTTGCTGATCAATGTACTGGACTCCACCTTCCTCAAGTCACTTTACAGTGGCGAACGAACAAAGCGATACGCCCAGGAGATGAAAACATCATTGCTTCATTTTGATGAGCGAATGGTTCTTCCTCGCTTGGAGAACCTGAAGCAGAGGAGCCGCTGGAAAGACCgctataaaGAGAGAGTAGAATGCTATCCGAAACTGCGGGTGGTGACGACAAGAACTCAGATGAAGGGTTGTGAAGCCTGCGAGCTTCACAGAACGGGCCGCTTCACGGTTCGTCTCTCTGGACAGTTGTACCACTGCGAGTCCCTGCAGGAGGACACGTTCATGCCTGACGATTCACAGAGTTTCTTTGTGGGCTCTGTCTGTGCCAGTCGTACGGAGGTCTACCATGCCTTGAAGCACTTTAAATACCATCTGTTTGAGAAGTGCCGTAAAACTATTGAAACTCGAAAGGAAATACAGGAAGGGGAAACGGGAGAGGACGATGAACCAGTCAAGGACACGGTCAACAAGGCCTTCACCAAACTGCAGGATGATGGCTGGATCAAGGAGCAATACGACGAGTTTCAAGAGCATCTCAATGCTGCCGATTTCTTCCAAGAAGAAAAGCTGGACTGAAAGGTTTTGAACTTGCCCTAAGGGCATCAGTCtgttgttttatttctgtaaatatgtatagttttgtcattttaaagcaTGTTTAACTTTTGAGTTGTTCACAAGTGTGTCCTTCAGATCCAGCATTTCATATCCTCACTGCTTTGTCACTTGCTTCAGCATGGCTGATACTGAATACAGTTCACATTTACAGAGCTACAACCCAAATTGTAaccattacttttttaaaaatcctgatgagttaaaactgtaaaaaaagaaagGGGGGTTAGTACATGATGCTTTATTAAACCCTGTATGCTATTTTTAAGCCTTCATTTATGAATGTCCTCATCTAATGATTCTGTGACAATGCATCCCAGTACTTTTACAGTGTTTCAAAGTTCTTGTAATAAACAACATAATCATG

Function

symbol description
ccdc82 Predicted to be active in nucleus. Orthologous to human CCDC82 (coiled-coil domain containing 82).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5749 Predicted to be active in nucleus. Orthologous to human CCDC82 (coiled-coil domain containing 82).

Ensembl:

ensembl_id ENSDARG00000014966

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037926 False 2062 mRNA 0.49 8 40685895 40709081
TCONS_00037927 True 1346 mRNA 0.45 6 40695345 40709239

Neighbor

gene id symbol gene type direction distance location
XLOC_019150 CU062645.1 coding upstream 50907 40632328 ~ 40634988 (+)
XLOC_019149 pdk3b coding upstream 72895 40589770 ~ 40613000 (+)
XLOC_019147 coro6 coding upstream 156711 40484088 ~ 40529184 (+)
XLOC_019148 CU929119.1 coding upstream 158223 40523913 ~ 40527672 (+)
XLOC_019146 ssh2b coding upstream 210168 40417116 ~ 40475727 (+)
XLOC_019152 NA coding downstream 73145 40782384 ~ 40789359 (+)
XLOC_019153 kctd16b coding downstream 235291 40944530 ~ 40959709 (+)
XLOC_019154 NA coding downstream 307190 41016429 ~ 41019437 (+)
XLOC_019155 bod1 coding downstream 758971 41468210 ~ 41480972 (+)
XLOC_019156 stc2b coding downstream 802230 41511469 ~ 41531434 (+)
XLOC_019143 NA non-coding upstream 284151 40400076 ~ 40401744 (+)
XLOC_019145 CR847523.1 non-coding upstream 284883 40400938 ~ 40401012 (+)
XLOC_019144 CR847523.2 non-coding upstream 285107 40400714 ~ 40400788 (+)
XLOC_019157 NA non-coding downstream 822411 41531650 ~ 41534965 (+)
XLOC_019158 NA non-coding downstream 838442 41547681 ~ 41553387 (+)
XLOC_019159 NA non-coding downstream 888900 41598139 ~ 41601982 (+)

Expression


Co-expression Network