XLOC_019159


Basic Information

Item Value
gene id XLOC_019159
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 41598139 ~ 41601982 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039470
attaaactgagaAAGTCAAGCTGccataataaatagttttaataatagatTATTTCCTGCCAAGACATTTCCTAGCCTAGTGAAGAGTACACATACATAGCATGTACAACTTAGGACTTCATcagcaaacataaaaaaaacaatgaaatgcaATGCTAACTTTCACCTCTCTCATACGTGGTCACTTCATCACAGATAAACATGAGCTCACAGAGAtgttggttggtcagttggtcagtaATAGAGAACACGTCCCACGCATTACCGCCGTCTGATTAAGATCAAGCGTTTAGCCTGAGACCACACTGCTGTTCACATTCACTAAACATCTGGCAGACTCTTCAGCGACCTGAAAACTAAGACAGAAGCAATGTTGTGTAGAAACGAGAACTACTTTTGGCTTTGTCCAAACTTTAATATCATTGTGAACATATGTGGTATATATTATGGGATACCACCAGGCCAGGAGTTCTATATAGCTCAAAAAAGGTCCAGGTTTGGTCGGTGCCGCTCAGAAATAAAGTCACTGGGGTGGAATTACATTTTTGTTCCTAGCAGGTCTTTACAgatacatattaatacctaaaaagtacaaatgtgttccTTATAGTACCATAAAGGaacaaaagtaaaccttaaagAGACAAAAGTGGAAACTCAACCAAGTAATGTCCACCTGTACGATACAAAAGTGGAGCTTTTGAAAGTTTTTGAATTACATCAGTGATAAATTTTGTACCTTTACTTCTGAGTGTGTTGCCAAGTGGTTCAGTGTGCCGACACATAGCAATAAtgtgctcacggtgacccgagttcaagtcctggcttgaggtcctttgccgatccttgcCCTTTCACGCTACTTCCAATTCATTCAGTTCGTAATCTCCACTCTCCTGTCCTCATAAAGACCCTAAAAAGTCCAGGTTTTGACTGTTTACACTGTACAGACTGATCACTATATGACATTCGTAAGAGGCATCATATAGCGCTGTATACTATCAAATCGCTCTCATGCTACTTTGAAGTCATGCAGCTatcatatgaagagttcagatgcaaaaacctctaaaaggcGTTTGAAAGTGCCTTCAAAAAGGGCCATTTTTGTCAGGCtcttgtgtgtaggttcagtaatttcaagtttatggcaaagaatacactcttctaaaggtttttaaaatgaaataactcaacatataCATGCTCATTTTCGATGgcctttagaggtttttgcatgtgAACTCTTCATACATACATGAATTAACGTCATTTTGAACGTTCTCTGTAGATCTCACCTTCACATGCACCACGATTGGTCGATTGTGTACAATGCTTGCACATTATTGATCAAACTGGCTTCAACAGGTAATAAATCCTGTCCATGACACATGTGGCAAGTATGGTCACTTAATAGATCATAATTATCTTTATTATTGACCTCTTTTGAATATAGGCTCATTTCATAACTACCCTAGAGATAAACAGTTGAGTTTCACTATTTttcaatccattcagctgatctttaggtctggcaggagcacttttagcttagcatagatcattgaatcggattagaccattagcatctcgctcaaaattttcaaaaaagtgttttgatcattttattatttaaagcttgactcttctgttgttacattgtgtactagCTTTCAAAAGATTTTTAACTGCATTAGTGATGTATCTTCATTTCTGAGTGTGTTGCCAAGTGGTTCAGTGTGTCGACACATAGCAATAATGTGCTCACTGTGACCCGAGTTCAAGTCCCGGCTTGAACTCTACTTCCAATTCTTTCTGTCCGTTATCGCCACTGTCCTGTCCTAATAAAGACCCTAAAAAGTCCAGGTTTTGACTGTTTACACTGTACAGACTGATCACTGTATGACATTTGTAAGAGGTGTAGGCATCATATAGCGCTGTATACTATCAAATTGCTCTCATGCTACTTTGAAGTCATGCAGCTatcatatgaagagttcagatgcaaaaacctctaaaagccgtTTGAAAGTTCCTTCAAACATGAActttttttatcaggctcctgtgtgtaggttcagtaatttcaggTTTTTAGCAAAGAATACACCCGTTTTAAGGTTTTTAAAATGAAACTCAACATAAACAcaggagtctgagaaaaatgctcatttccgatggaaatttcagatggcatttagaggtttttgcatctgaacacttcatatatacacatgtatttaCATCATTTTGAACATTCTCTGTAGATCCCAACTTCAAATACACCATGATTGGTCGATTGTGTACAATGCTTGCACATTATTGGTTAAACTGGCCTCAGCAGGGGCAATGTTACACAGTGCTTTAAAATAATCCCTAGCACCAAACCCTACACTTGAACCACCAGTTAGAATctgcgtaatatcattgtgcctgttGCAGGCATGGTACGACAGCAAAGTtctttgattattacgccagaatacGAGTACAGTTTCTAGCCATatcggcctagaaaatagcaaatCTTCATTGTcttgtcagtcttagtacacaacgTATACAGtagagtcaaactttaaataagaaaattaactCTTTTAAAATTTGCacgtgatgctaatggtctaatctaattcaatgatctatgctaagctaagctaaatgacACAaaaattggctgaatggattaaaaacgAAACTCTAGGGGTGTTGTAAATTAAGGCCATGATccataaaaattactttaaatagcaaattgGATGCGTCACAATTCCGTCTTGACTTTGTGCATGAGATCCTTCTGGTCAATCATCTCCGACTGTCTGTTCCAGCGGTGGTAGGCCAACAGTGCAATATTCTTGGCTGCCACTGAGCTCATCTCCATGGCACTCCCTGCCCACTCGATTCCATTAAGAAAGTACATGTTTTCATGCAGCACAACTGGCGGCAAGCCTTGAGTGCTGCCGTAATGAGGGTAGGCCATCCAATCGGTGACCTGCACAGAGTAGTAGGACTTAAAAAGGGTCTTCAGCTCACTCTTCTCCAGAGGTTTTGGGGAGAACACCTTGTAAACTCCCGCCTCCTGAGGCTGCTTTCGGCGGAAACCGGAGGTTATGTTGACGGGACAGACGCTGGCGGCGCTGTTGAAGAACAGCTCCTCGGTGTCGGTTGTGAGAATGCTTGAAAATGGGAAGAGCTTTGGATCTGGGAAGCCAAAGTAGGTGCAATTTAGGTAGccatggatgatggaggccaccgTTTGGTGGTAGGAGCCCACCATTTCTGGAATTTGAGGCTCAAAGCCCTGGAATGAGATGCCAGAGTTGACATTTTGTTGGAGCGGTGTCGCTATTACTACGATGTCGTAGATCTCGGATGTCTGTTCGCTTTGAGAGCTGTAGGTGAGCTCATACTGGTGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039470 True 3423 lncRNA 0.40 2 41598139 41601982

Neighbor

gene id symbol gene type direction distance location
XLOC_019158 NA coding upstream 44752 41547681 ~ 41553387 (+)
XLOC_019157 NA coding upstream 63174 41531650 ~ 41534965 (+)
XLOC_019156 stc2b coding upstream 66705 41511469 ~ 41531434 (+)
XLOC_019155 bod1 coding upstream 117167 41468210 ~ 41480972 (+)
XLOC_019154 NA coding upstream 578702 41016429 ~ 41019437 (+)
XLOC_019160 dre-mir-146b coding downstream 37997 41639979 ~ 41640058 (+)
XLOC_019161 ppp2r2bb coding downstream 47354 41649336 ~ 41777754 (+)
XLOC_019162 rnf14 coding downstream 235628 41837610 ~ 41862079 (+)
XLOC_019163 NA coding downstream 293162 41895144 ~ 41903528 (+)
XLOC_019164 NA coding downstream 441857 42043839 ~ 42050427 (+)
XLOC_019152 NA non-coding upstream 808780 40782384 ~ 40789359 (+)
XLOC_019150 CU062645.1 non-coding upstream 963151 40632328 ~ 40634988 (+)
XLOC_019165 NA non-coding downstream 548582 42150564 ~ 42154456 (+)
XLOC_019167 NA non-coding downstream 1061907 42663889 ~ 42677526 (+)

Expression


Co-expression Network