XLOC_019160 (dre-mir-146b)


Basic Information

Item Value
gene id XLOC_019160
gene name dre-mir-146b
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 41639979 ~ 41640058 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037932
GCTCTTGGCTTTGAGAACTGAATTCCAAGGGTGTCTGCTTTATATTCAGCCCACGGAGTTCAGTTCTTAAGTTTGGATGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000083360

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037932 True 80 miRNA 0.45 1 41639979 41640058

Neighbor

gene id symbol gene type direction distance location
XLOC_019159 NA coding upstream 37997 41598139 ~ 41601982 (+)
XLOC_019158 NA coding upstream 86592 41547681 ~ 41553387 (+)
XLOC_019157 NA coding upstream 105014 41531650 ~ 41534965 (+)
XLOC_019156 stc2b coding upstream 108545 41511469 ~ 41531434 (+)
XLOC_019155 bod1 coding upstream 159007 41468210 ~ 41480972 (+)
XLOC_019161 ppp2r2bb coding downstream 9278 41649336 ~ 41777754 (+)
XLOC_019162 rnf14 coding downstream 197552 41837610 ~ 41862079 (+)
XLOC_019163 NA coding downstream 255086 41895144 ~ 41903528 (+)
XLOC_019164 NA coding downstream 403781 42043839 ~ 42050427 (+)
XLOC_019165 NA coding downstream 510506 42150564 ~ 42154456 (+)
XLOC_019154 NA non-coding upstream 620542 41016429 ~ 41019437 (+)
XLOC_019152 NA non-coding upstream 850620 40782384 ~ 40789359 (+)
XLOC_019167 NA non-coding downstream 1023831 42663889 ~ 42677526 (+)
XLOC_019168 CABZ01079260.1 non-coding downstream 1027857 42667915 ~ 42668034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G185779 NA non-coding CI01000040 null 3889424 ~ 3891659 (+)
grasscarp (Ctenopharyngodon idella) G250227 NA non-coding CI01000058 null 3839079 ~ 3851329 (-)
striped catfish (Pangasianodon hypophthalmus) G240052 NA non-coding NC_047609.1 CM018555.1 13361098 ~ 13362499 (+)
mexican tetra (Astyanax mexicanus) G331816 NA non-coding NW_019172915.1 APWO02000141.1 235213 ~ 259555 (-)