G185779


Basic Information

Item Value
gene id G185779
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 3889424 ~ 3891659 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU210996
CGGCAGAAGAGCTTTCTGCATGTGTCTTATCATTCACGGCAGGTGCATGAGAGACATGATTCAGCATCCGCAATATGGTACTGGTACCGAAATGACTCACCGACAACAGATGATGTGGACCTGTCGAGAGAAGAGGGAAAACTAAAGGTCAAATAAAACCTCCTGCTTGACAGATTTGCATCACTCATGGATGTTAAACTGAGCTCTTGGCTTTGAGAACTGAATTCCAAGGGTGTCTGCTCTATATTCAGCCCACGGAGTTCAGTTCTTAAGTTTGGATGCTCTTTGCATCTGCTCTGACCTACAACCTGAACAAACATGCCTGCTACTGGACTGGAAGATACCGTTTATTATGCAGAATTTTTCAGCCCCAGTCCTCTTCTGCCTTTTTTAATCATAATGCAGTTCAGTGGATTCTGTCAGGTTGTGGATCATCATTAGAAATAAAATAGAAAACTATTGCTATAGTTTTGTATGGTGATTTTTTTTATTAACACTTGCCATATATTATATTTTGACATGAAACAATATCAATACGATGAGAAGCATGTTGTGAATAATGAACCTTATATTCCGAAGTCTTCGCTCTTCTCAGCAGGGTTTGTTGGTTGTCCGTCAATCACGGTTACGCTCCACGGGTGACAGAACTTTTCCTATATCTGCTCTCAGGTTGTGGAACCAACTTCCAGTTGAAATTCGGGAAGCAAAGTCTCTTGGAATTTTTAAAACGCATTAAAACATGTAAAAAACAAAACATGTATATAAAATTTTAAGCTAGCTTATTGTTGATTGTGGTAATCATTGCTGGTTTCTTGTTTATACTCTTTTGTTTGATTTATTTTGTATTTTCTTATACTGGAAAGTGCTTTGAGAAGGTCTTTTAAAGGCACTATA

Function

NR:

description
Low molecular weight phosphotyrosine protein phosphatase

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU210996 True 894 lncRNA 0.38 2 3889424 3891659

Neighbor

gene id symbol gene type direction distance location
CI01000040_03789687_03800746 STC2B coding upstream 88678 3789081 ~ 3800746 (+)
CI01000040_03761247_03762668 BOD1, FA44B coding upstream 126750 3761161 ~ 3762674 (+)
CI01000040_03297317_03298657 DRD1B, DRD1 coding upstream 590528 3296455 ~ 3298896 (+)
CI01000040_03271519_03276006 NA coding upstream 613384 3271063 ~ 3276040 (+)
CI01000040_03212701_03215022 POU4F3 coding upstream 674256 3212701 ~ 3215168 (+)
CI01000040_03939728_03943493 RNF121 coding downstream 46649 3938308 ~ 3943624 (+)
CI01000040_04047210_04060876 NA coding downstream 155551 4047210 ~ 4061675 (+)
CI01000040_04063098_04068134 PPP2R2B coding downstream 171288 4062947 ~ 4068198 (+)
CI01000040_04369595_04374831 NA coding downstream 476806 4368465 ~ 4375355 (+)
CI01000040_04442810_04474877 MAP4K6 coding downstream 550138 4441797 ~ 4475124 (+)
G185912 NA non-coding upstream 22570 3866621 ~ 3866854 (+)
G185790 NA non-coding upstream 85711 3802219 ~ 3803713 (+)
G185877 NA non-coding upstream 163189 3725985 ~ 3726235 (+)
G185871 NA non-coding upstream 177873 3711244 ~ 3711551 (+)
G185818 NA non-coding upstream 248667 3561538 ~ 3640757 (+)
G185914 NA non-coding downstream 1620 3893279 ~ 3893481 (+)
G185915 NA non-coding downstream 1826 3893485 ~ 3893687 (+)
G185788 NA non-coding downstream 21651 3913310 ~ 3914476 (+)
G185791 NA non-coding downstream 22926 3914585 ~ 3915460 (+)
G185938 NA non-coding downstream 75543 3967202 ~ 3967422 (+)
G185884 NA other upstream 150143 3738987 ~ 3739281 (+)
G185296 NA other upstream 555441 3333578 ~ 3333983 (+)
G184003 NA other upstream 2652935 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 2911261 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 3612569 240849 ~ 313275 (+)
G185947 NA other downstream 82106 3973765 ~ 3974123 (+)
G187510 NA other downstream 2077386 5969045 ~ 5971732 (+)
G188149 NA other downstream 2917032 6808691 ~ 6809130 (+)
CI01000040_06833701_06848731 NA other downstream 2946465 6832987 ~ 6849135 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019160 dre-mir-146b non-coding NC_007132.7 CM002905.2 41639979 ~ 41640058 (+)
grasscarp (Ctenopharyngodon idella) G250227 NA non-coding CI01000058 null 3839079 ~ 3851329 (-)
striped catfish (Pangasianodon hypophthalmus) G240052 NA non-coding NC_047609.1 CM018555.1 13361098 ~ 13362499 (+)
mexican tetra (Astyanax mexicanus) G331816 NA non-coding NW_019172915.1 APWO02000141.1 235213 ~ 259555 (-)