G185947


Basic Information

Item Value
gene id G185947
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 3973765 ~ 3974123 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU211185
CTCGCTTCCTCCATGGTACTTTGAGGCTAAGACCTGTGGCAAGTCAGAGGGTACCGACTTGGGATTTGGCCATAGTTTTGGAAGGCCTGTCCATGGCTCCGTTTGAGCCCATCGAAGAGGTTCCTGAGAAGTTCCTCACTCTCAAGACTCTTTTTCTTCTCGCTATCTCGTCTCTTAAGAGAATTGGAGACCTTCAAGCTCTGTCGGTCTCTCCCTCTTGTCTGGACTTTGCTCCAGGCATGGTTAAAGCCTTCTTGTTTCCTCAGGAAGGTTATGTTCCTAAGGTGCCCACTAATGTGGCGGGTCCTATAATGCTGCAGGCCTTTTGCCCTCCTCCATTCCAAGATCCAGACCAGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU211185 True 359 TUCP 0.51 1 3973765 3974123

Neighbor

gene id symbol gene type direction distance location
CI01000040_03939728_03943493 RNF121 coding upstream 30141 3938308 ~ 3943624 (+)
CI01000040_03789687_03800746 STC2B coding upstream 173019 3789081 ~ 3800746 (+)
CI01000040_03761247_03762668 BOD1, FA44B coding upstream 211091 3761161 ~ 3762674 (+)
CI01000040_03297317_03298657 DRD1B, DRD1 coding upstream 674869 3296455 ~ 3298896 (+)
CI01000040_03271519_03276006 NA coding upstream 697725 3271063 ~ 3276040 (+)
CI01000040_04047210_04060876 NA coding downstream 73087 4047210 ~ 4061675 (+)
CI01000040_04063098_04068134 PPP2R2B coding downstream 88824 4062947 ~ 4068198 (+)
CI01000040_04369595_04374831 NA coding downstream 394342 4368465 ~ 4375355 (+)
CI01000040_04442810_04474877 MAP4K6 coding downstream 467674 4441797 ~ 4475124 (+)
CI01000040_04475476_04499896 NA coding downstream 501189 4475312 ~ 4500113 (+)
G185938 NA non-coding upstream 6343 3967202 ~ 3967422 (+)
G185791 NA non-coding upstream 58305 3914585 ~ 3915460 (+)
G185788 NA non-coding upstream 59289 3913310 ~ 3914476 (+)
G185915 NA non-coding upstream 80078 3893485 ~ 3893687 (+)
G185914 NA non-coding upstream 80284 3893279 ~ 3893481 (+)
G185955 NA non-coding downstream 15557 3989680 ~ 3989921 (+)
G185959 NA non-coding downstream 34945 4009068 ~ 4009291 (+)
G186041 NA non-coding downstream 239993 4214116 ~ 4226490 (+)
G186057 NA non-coding downstream 265943 4240066 ~ 4240279 (+)
G186064 NA non-coding downstream 277919 4252042 ~ 4252331 (+)
G185884 NA other upstream 234484 3738987 ~ 3739281 (+)
G185296 NA other upstream 639782 3333578 ~ 3333983 (+)
G184003 NA other upstream 2737276 1230292 ~ 1236489 (+)
CI01000040_00977184_00977458 NDUA2, NDUFA2 other upstream 2995602 977184 ~ 978163 (+)
CI01000040_00240852_00305487 GABRB2 other upstream 3696910 240849 ~ 313275 (+)
G187510 NA other downstream 1994922 5969045 ~ 5971732 (+)
G188149 NA other downstream 2834568 6808691 ~ 6809130 (+)
CI01000040_06833701_06848731 NA other downstream 2864001 6832987 ~ 6849135 (+)

Expression


Co-expression Network