XLOC_001929 (paqr3b)


Basic Information

Item Value
gene id XLOC_001929
gene name paqr3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9222476 ~ 9235446 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003787
CACACTCTCACTTTAGCCTTTAGCTTGACGGCTAGTCGCCGGGTCATCAACATGACGACCATATGCTATTATTAAACAGAAGATAAGGAATATAAAGGACCGAATGGGATAAACAGCAAGTGTTTACCTGGAGGTGAGAGGTTTGCTGAAACTACAGAGAGATCTAATAGCCACTTGAACCAAGATGCCTCAAAACATCCTGAAAAGCACTCATTACATTGAGCTGGGCAGCTATCAGTACTGGCCAGTGCTTGTGCCGAGAGGAATCCGCTTGTACACCTATGAACAGATTCCCATGTTTCTGAAGGAGAATCCGTACATCACAGATGGATACAGAGCACACCTGCCATCAAAACTGTGCCTTAAAAGCATATTCATTCTGTCCAACGAGACGGTGAACATCTGGAGTCATCTGTTGGGCTTCCTGCTGTTCTTCTCTCTGGGAGTGAATGACATGGCCACAGTCCTGCCATCTGCAGGGGCGTCACGAGAGGACTACGTCATCTACTCAATAGGACTCTTCTGTTTTCAGGTTTGCATGCTGTGCTCTGTGGGCTACCACTTGTTCTGTTGTCATCGCTCAGAGAAGACATGTCGCCGCTGGCTTGCTCTGGATTATGCTGGAATATCAGTGGGAATTTTGGGATGTTATGTGCCTGGAGTCTTCTACGCCTTCTACTGCAACAGTTTTTGGAGGCAGGTGTACCTGCTGACGGTGCTGGCTCTCATCTTGGCTGTGTTTGCGGCTCAGATTCACCCGCTCTACCTCAGCCAGCAGTGGAAGAAGCTGCGCTCACTCATGTTCTGCTTAGTGGCTGCATACGGCATCATCCCAGCCTGCCACTGGGTCTGGATCAATGGGGGATTTTCCTCAGAAATCGTAAAGGTCTTTTTTCCTCGAGTCATGATCATGTATTTGATTGCAGCCTCTGCGTTCCTTTTTTACGTCAGTAAAATCCCAGAAAGATACTTCCCAGGGCAGCTGAACTATGTTGGTGCCAGTCATCAGCTGTGGCACGTGCTGGTGGTGGTCATGTTCTACTGGTGGCACCAAACCGCTGTTTACATCATGAACTACAGACACAATCAGCCCTGCGGCAGCACTTAAACATGCTTATCAGTCCTTCTGAGCCCTTTAGCTTCACCATATTCACTTGTTTGGCATTATTTTAAAGTCGCGCTGATAGAATCGAACAAAGAAACTTTACCTCTCATCTGCCTTTGAACATCGTACCGTAGGGTTACGTGCAATTTTGAGCTGATCTGCCTGAAACGTGTTTCATATACAGTTTTTTGTCTGTTACTTTCTTTGTTTTTGACTCctgttgaggtttttttttccacTATGGTATCAATGGGCTTGTGAATCCATCCATTCTGTTAATATGTGGCCTCATTTTATTGGATTGTCCTTCTATGACTGATGAATTGTGTGGAGGTTGATACTGTGATACTGTAattgtgcgttcacaccgaaagcggtgagagcgtccaaggtcgctgtgtctgccttcagctccggcagcgagagcgtcaaaattcgttACATTGATTTCGTATTTGAAGAGGcggttgcagcatatcagttatatttttgcataaaacatgctttctagcatgaaaatgttgcgcacttattatcaaattcatttaacaatggaagatcgatgtggctttgctccacttgaTTATCCAATGTCTCCATAAGTCTAAAATATCGTGAAGCTGCAACcctgttttgtactgtcgcatgagattcccgcttatttaaagatataaaacattaatgcacatcagtaactcgccagtaacttatttaatgtatgttcctgtaagaaaacatcgtAAATGATtgaaaatccggcgaccgcaataatcaaacactTGGGAACAACTGTTGTCGAAATCACagttcacaggactgtgttctctgaagttcattctgattgcttgccgctgaaccacgtcatagctcattaccataaagtcgacctgatttcaactctcctcgacgcccacaacggcgaagacgcgccgcgctgttcCTCGTAACTggcatttattgaaaatgaatgacttccggctactttgttgctctcgccggccgcagctctgcacagttttgttcctaccctaatcagacacacctgatccaactaatcaagctgttcaagactactcctgaacaccttgattagttggatcagctgtggttgattagggttggagcaaaactgtgtagagctgcggccctccaggaattgactttgagaCCCATGCTGTAATCTGTTTTATACTTGTTTGGTAAAGGGAGCCATTTTGATGTATTAAACACATTGAGTTGATGTACGTACGCACTGGAAACTGGGAATTTAAATGACCAAGAAAGCATTACTTCAGTACTTTATGTGAACAATGGGTGAAAATCACTATACTTGCACTTGTTTATTATGATTATGTATTTTGTATTGAAGGAGCGGTCGACTGTTTCTCAATCTCATcctttttataactttttattggttgtttgattttttttttttcatattttaatcttTTGGAATGCAATCAACTTTTTAAATGGTgaagctgaattaaaaaaaaaaacttgtttgt
>TCONS_00003788
CACACTCTCACTTTAGCCTTTAGCTTGACGGCTAGTCGCCGGGTCATCAACATGACGACCATATGCTATTATTAAACAGAAGATAAGGAATATAAAGGACCGAATGGGATAAACAGCAAGTGTTTACCTGGAGGTGAGAGGTTTGCTGAAACTACAGAGAGATCTAATAGCCACTTGAACCAAGATGCCTCAAAACATCCTGAAAAGCACTCATTACATTGAGCTGGGCAGCTATCAGTACTGGCCAGTGCTTGTGCCGAGAGGAATCCGCTTGTACACCTATGAACAGATTCCCATGTTTCTGAAGGAGAATCCGTACATCACAGATGGATACAGAGCACACCTGCCATCAAAACTGTGCCTTAAAAGCATATTCATTCTGTCCAACGAGACGGTGAACATCTGGAGTCATCTGTTGGGCTTCCTGCTGTTCTTCTCTCTGGGAGTGAATGACATGGCCACAGTCCTGCCATCTGCAGGGGCGTCACGAGAGGACTACGTCATCTACTCAATAGGACTCTTCTGTTTTCAGGTTTGCATGCTGTGCTCTGTGGGCTACCACTTGTTCTGTTGTCATCGCTCAGAGAAGACATGTCGCCGCTGGCTTGCTCTGGATTATGCTGGAATATCAGTGGGAATTTTGGGATGTTATGTGCCTGGAGTCTTCTACGCCTTCTACTGCAACAGTTTTTGGAGGCAGGTGTACCTGCTGACGGTGCTGGCTCTCATCTTGGCTGTGTTTGCGGCTCAGATTCACCCGCTCTACCTCAGCCAGCAGTGGAAGAAGCTGCGCTCACTCATGTTCTGCTTAGTGGCTGCATACGGCATCATCCCAGCCTGCCACTGGGTCTGGATCAATGGGGGATTTTCCTCAGAAATCGTAAAGGTCTTTTTTCCTCGAGTCATGATCATGTATTTGATTGCAGCCTCTGCGTTCCTTTTTTACGTCAGTAAAATCCCAGAAAGATACTTCCCAGGGCAGCTGAACTATGTTGGTGCCAGTCATCAGCTGTGGCACGTGCTGGTGGTGGTCATGTTCTACTGGTGGCACCAAACCGCTGTTTACATCATGAACTACAGACACAATCAGCCCTGCGGCAGCACTTAAACATGCTTATCAGTCCTTCTGAGCCCTTTAGCTTCACCATATTCACTTGTTTGGCATTATTTTAAAGTCGCGCTGATAGAATCGAACAAAGAAACTTTACCTCTCATCTGCCTTTGAACATCGTACCGTAGGGTTACGTGCAATTTTGAGCTGATCTGCCTGAAACGTGTTTCATATACAGTTTTTTGTCTGTTACTTTCTTTGTTTTTGACTCctgttgaggtttttttttccacTATGGTATCAATGGGCTTGTGAATCCATCCATTCTGTTAATATGTGGCCTCATTTTATTGGATTGTCCTTCTATGACTGATGAATTGTGTGGAGGTTGATACTGTGATACTGTAattgtgcgttcacaccgaaagcggtgagagcgtccaaggtcgctgtgtctgccttcagctccggcagcgagagcgtcaaaattcgttACATTGATTTCGTATTTGAAGAGGcggttgcagcatatcagttatatttttgcataaaacatgctttctagcatgaaaatgttgcgcacttattatcaaattcatttaacaatggaagatcgatgtggctttgctccacttgaTTATCCAATGTCTCCATAAGTCTAAAATATCGTGAAGCTGCAACcctgttttgtactgtcgcatgagattcccgcttatttaaagatataaaacattaatgcacatcagtaactcgccagtaacttatttaatgtatgttcctgtaagaaaacatcgtAAATGATtgaaaatccggcgaccgcaataatcaaacactTGGGAACAACTGTTGTCGAAATCACagttcacaggactgtgttctctgaagttcattctgattgcttgccgctgaaccacgtcatagctcattaccataaagtcgacctgatttcaactctcctcgacgcccacaacggcgaagacgcgccgcgctgttcCTCGTAACTggcatttattgaaaatgaatgacttccggctactttgttgctctcgccgctttcgttGTGAACATACGTTAAGCCATAGGtctcaaagtcaattcctggagggccgcagctctgcacagttttgttcctaccctaatcagacacacctgatccaactaatcaagctgttcaagactactcctgaacaccttgattagttggatcagctgtggttgattagggttggagcaaaactgtgtagagctgcggccctccaggaattgactttgagaCCCATGCTGTAATCTGTTTTATACTTGTTTGGTAAAGGGAGCCATTTTGATGTATTAAACACATTGAGTTGATGTACGTACGCACTGGAAACTGGGAATTTAAATGACCAAGAAAGCATTACTTCAGTACTTTATGTGAACAATGGGTGAAAATCACTATACTTGCACTTGTTTATTATGATTATGTATTTTGTATTGAAGGAGCGGTCGACTGTTTCTCAATCTCATcctttttataactttttattggttgtttgattttttttttttcatattttaatcttTTGGAATGCAATCAACTTTTTAAATGGTgaagctgaattaaaaaaaaaaacttgtttgta

Function

symbol description
paqr3b Predicted to enable signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PAQR3 (progestin and adipoQ receptor family member 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-128 Predicted to enable signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PAQR3 (progestin and adipoQ receptor family member 3).

Ensembl:

ensembl_id ENSDARG00000044253

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003787 False 2616 mRNA 0.43 8 9222476 9235445
TCONS_00003788 True 2670 mRNA 0.43 7 9222476 9235446

Neighbor

gene id symbol gene type direction distance location
XLOC_001928 antxr2b coding upstream 2813 9195190 ~ 9219663 (+)
XLOC_001927 rasgef1bb coding upstream 37809 9159279 ~ 9184667 (+)
XLOC_001926 NA coding upstream 96613 9122393 ~ 9125863 (+)
XLOC_001925 snx18b coding upstream 124480 9092815 ~ 9097996 (+)
XLOC_001924 fstb coding upstream 245653 8968203 ~ 8976823 (+)
XLOC_001930 slc37a4b coding downstream 46545 9281991 ~ 9285174 (+)
XLOC_001931 rbm18 coding downstream 110937 9346383 ~ 9370944 (+)
XLOC_001932 lhx6 coding downstream 137256 9372702 ~ 9395220 (+)
XLOC_001933 ndufa8 coding downstream 174858 9410304 ~ 9419994 (+)
XLOC_001934 si:ch211-243g18.2 coding downstream 314973 9550419 ~ 9571012 (+)
XLOC_001921 BX571955.2 non-coding upstream 353581 8862521 ~ 8868895 (+)
XLOC_001919 NA non-coding upstream 448817 8773436 ~ 8773659 (+)
XLOC_001917 NA non-coding upstream 506728 8709485 ~ 8715748 (+)
XLOC_001913 NA non-coding upstream 571621 8646959 ~ 8650855 (+)
XLOC_001937 CABZ01061749.1 non-coding downstream 490328 9725774 ~ 9725891 (+)
XLOC_001938 NA non-coding downstream 587751 9823197 ~ 9835446 (+)
XLOC_001939 NA non-coding downstream 655245 9890691 ~ 9895543 (+)
XLOC_001940 BX248503.1 non-coding downstream 677617 9913063 ~ 9913177 (+)
XLOC_001941 AL935269.1 non-coding downstream 942655 10178101 ~ 10195602 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_05913482_05916006 NA coding CI01000304 null 5912789 ~ 5916531 (-)