XLOC_019418 (rfesd)


Basic Information

Item Value
gene id XLOC_019418
gene name rfesd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 11829836 ~ 11834452 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038290
ATTCACAACCAGCAGCACTAGGACGAGGAAACAATATTAAAGCGCATCCATGGATGAAAAGAAGCCTTCTCGCATGTACTTCATTGGCAAAAAAGAAGAGCTCATTCAGGCCAAGAGAACGACTGTAACGCTGGACGGAAGAGACATCCTTTTATTGTATCATCAGAGAACTTTTTACGCAATGGACCTGCAGTGTTACCATGCTGGCAGCACATTAGAAACTGGAGATATTGAGGAAATCAACAGCAAGCTCTGTATCGTGTGCCCAAAGCACAAGTATAAGATCACTCTGGCTGAAGGCGAGGGTTTATACAAGGCCACAAACCCAACTGAAAAAGTGCCTACCCCGCGGTGGTACTCCAAAGGCATAAAGCAGAGAGTGCACAAAGTGACGGAGGTGGACGAGGACATCTTTGTGTCTGTGTCCACCTGCCCGGTGTGGATCGAGTCGGACTATTATCAGAGTGAGAAGGGCAGAGCGGAGCTGAAAAAAGCACAGGAGTCGGGCGACGCAGAGGCAGATGTCAATGCAGATGAAGACGTTTAGAGAGATCCTGAGGGAACCGCATATATTAGGATTGAGGATTTCAGAGGCAGTCTGCATGAATAAAACTGCAATCTGACATCACCAATCAAAATATTTCTTCCTTTTAGAGTCAGTGGCAGGATTTCTGTGCATCTCCGGGATTCACTGCAACGGCTTGACTTTCAAGACCACATTTCTCAGCTAAACACCGATGGATAAGCACATTTTTGAGTTATACGATGACTTTcttaaaagaagtttttattgtatgtgtgaatacaatatttaatgcaaaaaaagctCTAAGTTGCAATATTTTACGTTAAATTTGGAATTTGGATGTCTTTTTGCATTTAAGTTTCTATCAAAttgacttataaaaaaaaaaa

Function

symbol description
rfesd Predicted to enable 2 iron, 2 sulfur cluster binding activity and metal ion binding activity. Orthologous to human RFESD (Rieske Fe-S domain containing).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-254 Predicted to enable 2 iron, 2 sulfur cluster binding activity and metal ion binding activity. Orthologous to human RFESD (Rieske Fe-S domain containing).

Ensembl:

ensembl_id ENSDARG00000058725

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038290 True 915 mRNA 0.42 4 11829836 11834452

Neighbor

gene id symbol gene type direction distance location
XLOC_019417 si:dkey-6b12.5 coding downstream 9457 11776724 ~ 11820379 (-)
XLOC_019416 NA coding downstream 98818 11722608 ~ 11731018 (-)
XLOC_019415 NA coding downstream 172793 11565882 ~ 11657043 (-)
XLOC_019414 NA coding downstream 272149 11550677 ~ 11557687 (-)
XLOC_019413 NA coding downstream 279991 11546623 ~ 11549845 (-)
XLOC_019419 ube2r2 coding upstream 10789 11845241 ~ 11856143 (-)
XLOC_019420 nop56 coding upstream 124306 11958758 ~ 11970199 (-)
XLOC_019421 CT027620.1 coding upstream 126786 11961238 ~ 11961304 (-)
XLOC_019422 zgc:64106 coding upstream 150353 11984805 ~ 11996769 (-)
XLOC_019423 tpgs2 coding upstream 189344 12023796 ~ 12036134 (-)
XLOC_019412 NA non-coding downstream 340301 11474516 ~ 11489535 (-)
XLOC_019425 NA non-coding upstream 454155 12288607 ~ 12332807 (-)
XLOC_019426 AL928707.3 non-coding upstream 521133 12355585 ~ 12435062 (-)
XLOC_019427 NA non-coding upstream 614493 12448945 ~ 12482236 (-)
XLOC_019428 NA non-coding upstream 661256 12495708 ~ 12545977 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_12315343_12316143 RFESD coding CI01000006 null 12315299 ~ 12316231 (+)