CI01000006_12315343_12316143 (RFESD)


Basic Information

Item Value
gene id CI01000006_12315343_12316143
gene name RFESD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12315299 ~ 12316231 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_12315343_12316143.mRNA
TTATAAAACTCTTTTCACAGAAGACATAATCAAAACGCCACCACATGGAGGAAAAGAAGCCTTCTCGTTTGTATTTTATCGGCAAGAAAGAAGATCTCATTCAGGCCAAGAGAACGACTGTAACTCTGGATGGAAGAGACATTCTTATTATATATCATCAGAGAACGTTCTATGCAATGGATCTGCAGTGTTACCATGCTGGCAGTACCTTGGAAACAGGAGATATTGAGGAAATCAACAACAAGCTCTGTATTGTGTGCCCAAAGCACAAGTATAAGATCACTCTGGCTGAAGGCGAGGGGTTATACAAGGCCAAAAACCCCATGGAAGCAGTCCCTACCCCGCAGTGGTATTCCAAAGGCATAAAGCAGAGAGTGCACAAAGTGACGGAAGTAGACGAAGACATCTTTGTGACGTTGTCCACTTGCCCCGGGTGGATTGAGTCAGACTTTTATCAGACTGAGAAGGGCAGGGCAGAACTGAGAAAAGCGCAGGAGTCGGAGGATGGAGAAGAAGACGTGAATGCAGATGCAGATGAAGACGTATAGTCTGGAAGCAACAGTGAGACGAGAGCTTCAAAGATCCTAAGGGAACTGCATATATTAAGATTGATGATTTCAGAGTCAGTCTGCTTGA

Function

symbol description
rfesd Predicted to enable 2 iron, 2 sulfur cluster binding activity and metal ion binding activity. Orthologous to human RFESD (Rieske Fe-S domain containing).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_12315343_12316143.mRNA True 636 mRNA 0.44 3 12315299 12316231

Neighbor

gene id symbol gene type direction distance location
CI01000006_12307031_12307314 NA coding upstream 7980 12307031 ~ 12307319 (+)
CI01000006_12298229_12304430 UB2R2, CDC34, UBE2R2, UBE2R2.S, CDC34A, CDC34B coding upstream 10696 12297797 ~ 12304603 (+)
CI01000006_12242654_12249350 NOP56, NOP56.L coding upstream 65744 12242654 ~ 12249555 (+)
CI01000006_12230746_12235389 NA coding upstream 79774 12229547 ~ 12235525 (+)
CI01000006_12219317_12222975 TPGS2 coding upstream 92182 12219317 ~ 12223117 (+)
CI01000006_12345828_12346634 NA coding downstream 29597 12345828 ~ 12346920 (+)
CI01000006_12447621_12461167 NA coding downstream 131390 12447621 ~ 12461191 (+)
CI01000006_12592270_12606447 NA coding downstream 275607 12591838 ~ 12607314 (+)
CI01000006_12608120_12620040 NA coding downstream 291889 12608120 ~ 12620111 (+)
CI01000006_12684154_12695960 DNAJC21 coding downstream 367330 12683561 ~ 12696396 (+)
G48086 NA non-coding upstream 53955 12259495 ~ 12261344 (+)
G48214 NA non-coding upstream 87045 12228047 ~ 12228254 (+)
G48119 NA non-coding upstream 157593 12143871 ~ 12157706 (+)
G48113 NA non-coding upstream 197279 12103183 ~ 12118020 (+)
G48146 NA non-coding upstream 309796 12005256 ~ 12005503 (+)
G48075 NA non-coding downstream 34531 12350762 ~ 12571161 (+)
G48251 NA non-coding downstream 181123 12497354 ~ 12500200 (+)
G48122 NA non-coding downstream 203115 12519346 ~ 12532674 (+)
G48270 NA non-coding downstream 261264 12577495 ~ 12577940 (+)
G48079 NA non-coding downstream 264094 12580325 ~ 12582476 (+)
G48094 NA other upstream 35758 12277620 ~ 12279541 (+)
G47318 NA other upstream 677047 11624267 ~ 11638252 (+)
G47159 NA other upstream 793596 11416229 ~ 11521703 (+)
G47145 NA other upstream 1803493 10485358 ~ 10511806 (+)
G46652 NA other upstream 2156048 10156579 ~ 10159251 (+)
G48081 NA other downstream 60775 12377006 ~ 12384827 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019418 rfesd coding NC_007132.7 CM002905.2 11829836 ~ 11834452 (-)