CI01000006_12219317_12222975 (TPGS2)


Basic Information

Item Value
gene id CI01000006_12219317_12222975
gene name TPGS2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12219317 ~ 12223117 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_12219317_12222975.mRNA
ATGGAGGAGGTGAAGGATGACAAGACATACAAGGGGTTTGTGGATAGACTCACCCTCGGTATTACTCGGGTTTTGGAGAACCTCCCTGGTGTGCTGGATGTACGATTTGCAGAGAAGGCTCCTGCAGAAAAGAGATGCCTTCTCTCTTGGGAGCAGAAAAACAACTGTGCTTTGCCAGAAGATCTCCGAGATTTCTATCTCACAACAGATGGCTTTATGCTTGCCTGGAACTCCAAGCTGGAAAATGAAGTGGTTCAAGTGGGATGTATGGTGATAAACAGTGTTGCTCAGCTACGCCCCCTGATTCAGTCAAATGTATATTCCCTCCCCAATGCACCTACGTTAGCTGATCTTGACTTCGATGATGACTTAGAGGAATCTGATGGCCCTGTACAACCTCATTTTGATTCTCGTAGTCGCATATTTGAGCTGGATCCTTGCAATAGTAATGGCAAAGTCTGCCTTGTTTACAAGAGCTGCATTCCAGGTGTAATGGCCCAGCAGTGTGAGGTGTGGTTCTTGGACCGATCACTTTTCTGGCACTATCTCACCCCTTCCTTCACTGCCTACTACCGACTTATGATCACTCATTTGGGGCTGCCGGAGTGGCAGTATAATTTCACTCCGTATGGCCCCAGCCCACAAGCTAAGCAATGGGCTGCTCTCTACCAACCCCTGACGTTCTATGGTGATCTCCATCTTGATACATCCAGTGAACCTTTACTGAACAAGCTGGACCCAGCCAAGGCGTTCCGCGGCAAGGCCAAGCCACCCACTCCCAAGAAGAAGCAGCCAGCACAGGTCCCAGCGAGCGGCGGAAGTACAGCTAAAGGACAGGGGGCCTCGGGGAGACACAGCGTGACTAAACGATGACCCCGCTGTCCCAACAAATGCCCATTGACTGTTCTCATACAGGCATGTTGACTGTTCTTTTGGCTAATGCTGGGCATTTATCCTGATTTAAGCAGTTTAATTTCATCTTTTGATGCCCATAAGTCTGTGTGCAAAAAATTTA

Function

symbol description
tpgs2 Predicted to act upstream of or within protein polyglutamylation. Orthologous to human TPGS2 (tubulin polyglutamylase complex subunit 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K16605 TPGS2; tubulin polyglutamylase complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_12219317_12222975.mRNA True 1015 mRNA 0.49 7 12219317 12223117

Neighbor

gene id symbol gene type direction distance location
CI01000006_12176092_12189504 NA coding upstream 29489 12176092 ~ 12189828 (+)
CI01000006_12092807_12095434 NA coding upstream 123649 12092389 ~ 12095668 (+)
CI01000006_11888383_11923287 NA coding upstream 294927 11888192 ~ 11924390 (+)
CI01000006_11784520_11803562 NA coding upstream 415467 11782031 ~ 11803850 (+)
CI01000006_11751944_11752854 NA coding upstream 466099 11750854 ~ 11753218 (+)
CI01000006_12230746_12235389 NA coding downstream 6430 12229547 ~ 12235525 (+)
CI01000006_12242654_12249350 NOP56, NOP56.L coding downstream 19537 12242654 ~ 12249555 (+)
CI01000006_12298229_12304430 UB2R2, CDC34, UBE2R2, UBE2R2.S, CDC34A, CDC34B coding downstream 74680 12297797 ~ 12304603 (+)
CI01000006_12307031_12307314 NA coding downstream 83914 12307031 ~ 12307319 (+)
CI01000006_12315343_12316143 RFESD coding downstream 92182 12315299 ~ 12316231 (+)
G48119 NA non-coding upstream 61611 12143871 ~ 12157706 (+)
G48113 NA non-coding upstream 101297 12103183 ~ 12118020 (+)
G48146 NA non-coding upstream 213814 12005256 ~ 12005503 (+)
G48067 NA non-coding upstream 237211 11981856 ~ 11982106 (+)
G47948 NA non-coding upstream 342266 11876815 ~ 11877051 (+)
G48214 NA non-coding downstream 4930 12228047 ~ 12228254 (+)
G48086 NA non-coding downstream 36378 12259495 ~ 12261344 (+)
G48101 NA non-coding downstream 85025 12308142 ~ 12349571 (+)
G48075 NA non-coding downstream 127645 12350762 ~ 12571161 (+)
G48251 NA non-coding downstream 274237 12497354 ~ 12500200 (+)
G47318 NA other upstream 581065 11624267 ~ 11638252 (+)
G47159 NA other upstream 697614 11416229 ~ 11521703 (+)
G47145 NA other upstream 1707511 10485358 ~ 10511806 (+)
G46652 NA other upstream 2060066 10156579 ~ 10159251 (+)
G45416 NA other upstream 3384620 8818814 ~ 8834697 (+)
G48094 NA other downstream 54503 12277620 ~ 12279541 (+)
G48081 NA other downstream 153889 12377006 ~ 12384827 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location