G48075


Basic Information

Item Value
gene id G48075
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12350762 ~ 12571161 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU54687
TAGGTGGACAGGTCAGGAATTCTCTTACAGTCTGAAACCCCCATCCCACCTTTAAAACAAGAGATGACAGTGTTATGAGATTCTTGGCTTATTATCCAACATTAACATCTCTCATTAGTGGTGTCAGAGAAAACAGGTGTTGGTCACACACACACACACACCACCAAATACTTCCCCACCCAACCCAAATTACAATGATACCAAGTTCTATGTGTAGATGCACATTCTCCGTTCCAAGCAACACTTCTTAGTGTCATCCCAAATCTTTAGGGTTCAGTGTGGTGGCTATTTGAATGCTGAGGAAATAAGCATCTGAGAAGTAAAGTGCTGCTAAATTTCTCTGTTAAATACCCATGACTTGTATTTGGTTGTCATCAAACATTGCGATCAGTCTATAAACAGGGACTAAAATGAACAGAAGCTCACACAACAGAACATCTTGGTGAGTTTGATAACACGCAAGTCCCTTAAAGAAGCAGATAAGATGCCATCTGCCGACCCAAATACTGAGAACCAACATTTGTCAATGGTTATTTTGAGAATGGCTCACTCAAGGTTTTTAAATTTCAATTTACAACACTGGAAAATAATGGAATAAATGTGATTCTAAGACGAGAGAGAGAATTTGTTTTCAGATCTCAAAACGACATCTTAAAATGTGCAAATACGATGCAGCAAGCCTCAAGAATCAACTAGCCAATCAGAATCCACCACGGAGCTATTTGACTAGTGAGAATTTCCATAATTGCAAGCAATGTTATTTTCAAGGCTGATTCACAAAGCTGCATTCTGAATATTTTCCCGAAACAAAGACCAAAGAAAATAAATATATACGAGGACACTGTTCAACCACCATCTCCTTTTAGATACCAAAGTGTCACTCAGAGAAACGTGTCTTATTCCAGACTATCAACATAGGATTGAAAGGATTTTTGTTTCCTTTTTATTACTTTTTTTTGGCAAAACTTCCTACCACACAGGTTTTGTAAACATAACGTTTCCCTTAATCTTTAAGAAGTTTATCACCGTGAAATAAAGACTTTACTTTTTCATAAATTTGATCAGTATCTTTTTCAATACTCAATTCCAGCAATTCCTTTTAATTCAAAACAAAAAAAACAAAAACAAATAATATATATATATTGCTATTCATATTTTATAAATAACTCTTGCAATAATTAATGAATACATTTGAAATGGATATACAGGTCTGCCTCTGCTCGATGCATTTCCTTTATAAATCAGTAGCACCTTTGCCTTCAAGATGGTTCGATCATTTACTTAAACAGAGCAGGCCCAAATTAAGAACATGTAACATGAGCCAGGTTGATCCCGAAGGCTCTGGCTGATCAAAGAAAAATATTTATATAGCAGCTTTTTTTTGGGGATTTTTGTTTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTGATCATCATATATTTTGTTTATTGCATGAATCTTAGCATGATATTAACTGCTAAATGATTTTGTAGTCAGGTTAGCATTGCTCAGTTCTTCTTGACAGTAGGGTAGCTGGAAAAGACGGTAGTCCAGTAGTAAACCAAACGCGTTCTCAACATCTCCTTCACACTGTTCTTGTTCATACTGTTGTGTATGTCTAGGTACTTATGGCCAGTGCCTGCGAACTCAGGCCAGGTTACAGGAACACTGGACTCACCTTTGTTAGGGTCACAGTTTGAGCAAAATTGGTCCAGTAGGCAATCATGTATCTGGAGACGTCACGATGGCGAGGAAAGTAGCCCAAAGGAGTGGTGAAAGGCTTCCCAAACACATACTGCAGGTCGTCAGCGTGATCGGCACCCATCCAGAGCGGGAAGATAGGCATGCGAGAGGGCTCACTGAACAGGTAGGAGTAGGTTCGTGCAGTTCTTGGCATGGTCAGTGTGGAGGTACAGGGCCGTCTGGGTTGGCACCAGGAAGATGTAGTCCGTCTCAATGTCCACAACTGTTTTCTTAATATCCTTATCACTAGGGTTACTACCCCAATTGGCCGTGTACGCCTGATAAGTTGCGATACCAGCCTCTTGTCCTCTAGCTTCAGACAGGGAAATCGAGAGAGCCCTAACATCCGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU54687 True 2125 lncRNA 0.48 5 12350762 12571161

Neighbor

gene id symbol gene type direction distance location
CI01000006_12345828_12346634 NA coding upstream 3842 12345828 ~ 12346920 (+)
CI01000006_12315343_12316143 RFESD coding upstream 34531 12315299 ~ 12316231 (+)
CI01000006_12307031_12307314 NA coding upstream 43443 12307031 ~ 12307319 (+)
CI01000006_12298229_12304430 UB2R2, CDC34, UBE2R2, UBE2R2.S, CDC34A, CDC34B coding upstream 46159 12297797 ~ 12304603 (+)
CI01000006_12242654_12249350 NOP56, NOP56.L coding upstream 101207 12242654 ~ 12249555 (+)
CI01000006_12592270_12606447 NA coding downstream 20677 12591838 ~ 12607314 (+)
CI01000006_12608120_12620040 NA coding downstream 36959 12608120 ~ 12620111 (+)
CI01000006_12684154_12695960 DNAJC21 coding downstream 112400 12683561 ~ 12696396 (+)
CI01000006_12764729_12782405 NA coding downstream 192755 12763916 ~ 12783368 (+)
CI01000006_12808989_12841786 NEDD4L coding downstream 237828 12808989 ~ 12842198 (+)
G48101 NA non-coding upstream 1191 12308142 ~ 12349571 (+)
G48086 NA non-coding upstream 89418 12259495 ~ 12261344 (+)
G48214 NA non-coding upstream 122508 12228047 ~ 12228254 (+)
G48119 NA non-coding upstream 193056 12143871 ~ 12157706 (+)
G48113 NA non-coding upstream 232742 12103183 ~ 12118020 (+)
G48270 NA non-coding downstream 6334 12577495 ~ 12577940 (+)
G48079 NA non-coding downstream 9164 12580325 ~ 12582476 (+)
G48278 NA non-coding downstream 108333 12679494 ~ 12679697 (+)
G48284 NA non-coding downstream 109676 12680837 ~ 12681068 (+)
G48285 NA non-coding downstream 129504 12700665 ~ 12700892 (+)
G48094 NA other upstream 71221 12277620 ~ 12279541 (+)
G47318 NA other upstream 712510 11624267 ~ 11638252 (+)
G47159 NA other upstream 829059 11416229 ~ 11521703 (+)
G47145 NA other upstream 1838956 10485358 ~ 10511806 (+)
G46652 NA other upstream 2191511 10156579 ~ 10159251 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G244353 NA non-coding NC_047609.1 CM018555.1 21166624 ~ 21216946 (+)