CI01000006_12230746_12235389


Basic Information

Item Value
gene id CI01000006_12230746_12235389
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12229547 ~ 12235525 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_12230746_12235389.mRNA
GGATAAAAGGAAATCTGGAGTACAACAAATCTCCTCAGCCAACTTGACCTTTCAACTGCATGCAGGCAGCTCAGATTGTTTCTTCACGTTACATCCTTACGCCAGTACAAGTGTTTGTCTTTATAATTGAGTCACTGAATCGTTAATTCATTCCAAATGCTGATTCATTTAGGAACCAAACAAGTTGTGAATGAATTATTGCGCCATCCATTCAACCGATTTGTTCAAAACAGTGAATCATTCAGGAACAAAACAAAACACAAAGTAACTGGCAACATTGAAAGTCATTCAGTTTTAACTTCTTGACTTTATACTGTTGTATAAAAATCATATTACCAAATCGTGCTGCCTTTTTGTTACTCAAATAATTATTATAAAAATGGCTAGAACTTTCATTTCTATATTCTAACGTGACGTTTTCGACTTAGTAGCCTAATCATAGTAAAATTTAACTAGCAAAGGCAGATCCTGGTTTTTGATGCAAGAAAGTAGTTCCACACACAAAAGGGCATTTTCCCATAGCCTATACTTGACGTGAATTATTGTTTAAAAAAAAACAAAAATCAATTTCTTGCTTGTGTTATTGATTTAGTATATAATTAATTACAAAGGATTTATGAATTCCAAAAAATAGGCTACTATTTTAGTTCATGCTATTTTAATCACCGATATGTTTACATAAGTACACAATAATTAATATATATAATATAATATAATATAATATATATTAATATATAATAAATATTTCATTCATAATAATAAAATATATTAAAATTTGATAAAATTGTTAAAATTAAAAAAAAAAAAAAATCCGATACATAAATCAATATATTTTATTTATGAAATGTGTATTTACTCTGACGTGTTTGCAACACTTATTGAATAGTCCGTATGGATTTGCTTCTCAGGTATGAATATATTTGTCTCATGTTCCAAAGCGAAATGTATCTGTTTGTCTGTCTGTCTTTTACTGTAATTGGAGCTGCTTCAACTCATAACTGTAGGCTTATATCTGCAGGTTTATGATCAAATGAGTTCCGAAGTTAAGACCGAGAGTCGAATTCCTTTAATGCATTTATAGTCTTTGCCCTGTGCACGCGCACAGTGCGCAGTCGTGCCAGGGTCACTCGGACTAAGCTAGACATTTGGTCTCTTTTAAGTAAACCGAGGATTTCAACGGAGGCACACGGACTTATTAAATGACCTGGGAGTGGAGTGACATACATTCCCATCCGTTATGGATGGTTTCAACGGCGATCTTGGCTATAATTGTGCGCGCGCAGCGGAGAGTGCCCTGGAACCCACGCGCTTGTCCTGTGGAGTTAAAAGGAAAAACTGCGATTATTACTGGCGCCAACACCGGGATTGGGAAGTTCATTGCCCTGGACTTTGCTCGTCGTGGGGCGCGGGTGATCCTGGCTTGCCGGAACGAGGCTCGTGGGACTGCAGCGCTGCAAGAAATCAGAGACAGCAGTGGGAACCAGAACGTGCATCTGCGTCTGCTTGACACCTCGTCGCTCGAGTCTGTCCGGAAGTTTGCGGCACGGATCTTGGAGGAAGAGAAGGAATTACACATCCTGGTCAATAACGCTGGGGCCTCAGGCCTACCCAGTAAGATCACCGCTGATGGGTTGGAAATCACATTTGCAACCAACCACATTGGGCCGTTCCTGCTCACCAGTTTGCTTTTAGACCTTTTGAAGAAATCAGCCCCAGCACGCATTGTAAATGTTTCTTCTATGAATCACTGGAAAGGCAAAGTGGACTTCTCCCATTTCCGTGGGGACAATCTTAGCAATGTGATGGATGCTGCATATAACCACACCAAGCTGCACAATGTCATCTGGACCAATGAGTTGGCACGCAGACTTCAGGGCACAGGAGTAACAGCAAACTCTCTGCATCCAGGTGTAGTTATGACAGATGTAATGAGAAACTATAACTTCATTATCCGATTCCTCTTCAACTTGGTCGGCTTTTTCTTCTTCAAAACTCCTGAAGAGGGGGCTTTCAGCCCAATTTACTGTGCCATTTCAGAGGAAACAGAGGGAATCACTGGAAAATACTTCGACAGTGACTGTTCCCTGGTCCTTGCAGCACCTCCTGCCAGAGATCCTGCTCTTGGAGTGAAGGAATATGAGTTCTGTGAGAGACTGACTGCTAAACCATAAAGAGATAATCCACCTAAGAAGAAAACTCCGTCATCATTAATTCATATGCATATGCAATGTGAATTGTCACTTTTCACATCTAAATGACACATCTAAATGTTTCAACATATGTTCTCTATTTCCTCTGAGTTTTGCA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_12230746_12235389.mRNA True 2307 mRNA 0.39 6 12229547 12235525

Neighbor

gene id symbol gene type direction distance location
CI01000006_12219317_12222975 TPGS2 coding upstream 6430 12219317 ~ 12223117 (+)
CI01000006_12176092_12189504 NA coding upstream 39719 12176092 ~ 12189828 (+)
CI01000006_12092807_12095434 NA coding upstream 133879 12092389 ~ 12095668 (+)
CI01000006_11888383_11923287 NA coding upstream 305157 11888192 ~ 11924390 (+)
CI01000006_11784520_11803562 NA coding upstream 425697 11782031 ~ 11803850 (+)
CI01000006_12242654_12249350 NOP56, NOP56.L coding downstream 7129 12242654 ~ 12249555 (+)
CI01000006_12298229_12304430 UB2R2, CDC34, UBE2R2, UBE2R2.S, CDC34A, CDC34B coding downstream 62272 12297797 ~ 12304603 (+)
CI01000006_12307031_12307314 NA coding downstream 71506 12307031 ~ 12307319 (+)
CI01000006_12315343_12316143 RFESD coding downstream 79774 12315299 ~ 12316231 (+)
CI01000006_12345828_12346634 NA coding downstream 110303 12345828 ~ 12346920 (+)
G48214 NA non-coding upstream 1293 12228047 ~ 12228254 (+)
G48119 NA non-coding upstream 71841 12143871 ~ 12157706 (+)
G48113 NA non-coding upstream 111527 12103183 ~ 12118020 (+)
G48146 NA non-coding upstream 224044 12005256 ~ 12005503 (+)
G48067 NA non-coding upstream 247441 11981856 ~ 11982106 (+)
G48086 NA non-coding downstream 23970 12259495 ~ 12261344 (+)
G48101 NA non-coding downstream 72617 12308142 ~ 12349571 (+)
G48075 NA non-coding downstream 115237 12350762 ~ 12571161 (+)
G48251 NA non-coding downstream 261829 12497354 ~ 12500200 (+)
G48122 NA non-coding downstream 283821 12519346 ~ 12532674 (+)
G47318 NA other upstream 591295 11624267 ~ 11638252 (+)
G47159 NA other upstream 707844 11416229 ~ 11521703 (+)
G47145 NA other upstream 1717741 10485358 ~ 10511806 (+)
G46652 NA other upstream 2070296 10156579 ~ 10159251 (+)
G45416 NA other upstream 3394850 8818814 ~ 8834697 (+)
G48094 NA other downstream 42095 12277620 ~ 12279541 (+)
G48081 NA other downstream 141481 12377006 ~ 12384827 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location