XLOC_019496


Basic Information

Item Value
gene id XLOC_019496
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 18266319 ~ 18275337 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038413
TCACAAACAGCAGTAGTATCTCCAGCTCCAGTGCCCGCTATCACTCCTAGCATACCAGCTGTACAGAACACAACTGCTGCCGCTGTGATACCCAGCATGCCTCCATCACAACCCACGGTTAAAAAAGGGGTAAAGAGGAAAGCAGACACAACCACCCCTACTACCTCTGCTATCACCGCGAGCAGAAGCCAATCACCCACCCCAATTTTAGAAGGCAAGCAGAGCAAGCACTGTTCCAGGAAACAGGCAACCAAAGAAGGGTGGCAGAGGGCCAGGCTATGAGTCTGACGAGGAGATGTCGCTCCCCATGACGTACGAtgagaaacggcaactgagcctcGACATTAACCGGCTGCCTGGAGAGAAGCTGGGTCGGGTGGTCCATATTATTCAGTCCAGAGAGCCTTCGCTGCGTGATTCCAACCCTGATGAAATTGAAATAGATTTTGAGACGCTGAAACCTTCCACTTTGCGAGAGCTGGAGCGATACGTCAAGTCCTGTTTACAAAAGAAACAGAGGAAACCTCCACAGAAAGGAGGTTCTGGTCCGTCTCGGCTCAGCGGCAGCAGCAGTTCCTCAGACTCGGGGAGCAGCAGCTCCAGTGGCTCCACTTCAGACAGCAGTGACTCCGACTGAAcacctttttatttacttttttatttttatttttttttaaaaacattgtatgCAGTCAAGGTTGTTTCCCCTCTGAGACTTtttataagaaagaaagaaaagagacaaTAAAAATGCATCatgtcagaattttttttttctcttggaaATGTCATGAAGAAAATTACAGATTAAAAAAGCAAATTAATAGATTGCTTTTTATTTCCACTGACTCTGAAAGGGATGTCCTGAAGCTGCAAAGAGAGGAAGTCAGTAATTCTCTTCCCTGGCATCCTGGTAATGTTGTACGTTACCATCGCAAAATAAAGCATCCCATCTCACCAGAGAGAGCAGAAAACTGAATGCTCACACTCTTCTCTCCTGATTCAACTTCTGCACCGCTCTgtgttgtatttattgttttgtttttttcgttTTTGCTGTGGCCTCATGTTTTTCCCTATTGGACGCTGTGccattattgactttttttttattaatactttcttttattattgtcCTCTCGTGAACTGAAACGTATGTCTATAAAAATCATGCCTTTCCTATTGTCACAAATCTTAAGTAGTCCGG
>TCONS_00038411
GGAGCCGTCTCCACTGGCTCACCCACATCAGTTTTTCCAGGTGCCACATCGCCGAGTTCACAAACAGCAGTAGTATCTCCAGCTCCAGTGCCCGCTATCACTCCTAGCATACCAGCAGCAGTTCCTCAGACTCGGGGAGCAGCAGCTCCAGTGGCTCCACTTCAGACAGCAGTGACTCCGACTGAAcacctttttatttacttttttatttttatttttttttaaaaacattgtatgCAGTCAAGGTTGTTTCCCCTCTGAGACTTtttataagaaagaaagaaaagagacaaTAAAAATGCATCatgtcagaattttttttttctcttggaaATGTCATGAAGAAAATTACAGATTAAAAAAGCAAATTAATAGATTGCTTTTTATTTCCACTGACTCTGAAAGGGATGTCCTGAAGCTGCAAAGAGAGGAAGTCAGTAATTCTCTTCCCTGGCATCCTGGTAATGTTGTACGTTACCATCGCAAAATAAAGCATCCCATCTCACCAGAGAGAGCAGAAAACTGAATGCTCACACTCTTCTCTCCTGATTCAACTTCTGCACCGCTCTgtgttgtatttattgttttgtttttttcgttTTTGCTGTGGCCTCATGTTTTTCCCTATTGGACGCTGTGccattattgactttttttttattaatactttcttttattattgtcCTCTCGTGAACTGAAACGTATGTCTATAAAAATCATGCCTTTCCTATTGTCACAAATCTTAAGTAGTCCGG
>TCONS_00038412
AGATTGAGAACTTGTGGTTTAATGCTGAACAGCAGATGGTTGAGCGCGCCAATGCGCATGCGCACAGCACTTCGCGTACCTCATCTCTGTGCTCCTGCCCAGCCTCCAAACAAGCGACGAGCCACTGGGATTGCCACACGGTAACTCCTTTCCTGAAGCCTTTGAaggttGAAGGTTGGGTCCTGCAATGGGATATGGTCCCTCTCAGATGACTGAAGagctaaaaaaacagaaaagcatAAAAAAGGCACTCTGAAAATAAGTcttttgcagaataaaaaaacCTTTCCCATTAAGCAGTTTTTCCCCTCTTCACCAAAATGTCAGCTGTCACTTCCGCAACCCCAGAACCTCCTGCAGCCGCAAACCCTCCTCCTCCAGAGGTGATCAACCCTACCAAACCTGGCCGCAAGACTAACCAATTGCAGTACATGCAAAATGTTGTTGTCAAGACGCTGTGGAAGCACCAGTTTGCATGGCCATTTTACCAGCCAGTTGATGCTGTTAAGCTTGGCCTTCCGGATTATCACAAGATCATAAAGAACCCAATGGATATGGGCACCATCAAGAAAAGACTGGAGAGCGTTTACTACTACAGTGCAAGCGAGTGTATGCAGGATTTCAACACAATGTTCACAAACTGTTATATTTACAACAAGcCAACGGATGATATTGTGTTGATGGCACAAGCGTTAGAGAAGATCTTCCTTCAGAAAGTGGCCCTCATGCCCCAGGAAGAGGTTGAGCTGCTTCCACCTGCCCCGAAGGGCAAAGGGCGCAAACCAGCAGGGCCTGGTCAGCAAGATGGAGCCGTCTCCACTGGCTCACCCACATCAGTTTTTCCAGGTGCCACATCGCCGAGTTCACAAACAGCAGTAGTATCTCCAGCTCCAGTGCCCGCTATCACTCCTAGCATACCAGCTGTACAGAACACAACTGCTGCCGCTGTGATACCCAGCATGCCTCCATCACAACCCACGGTTAAAAAGAAAGGGGTAAAGAGGAAAGCAGACACAACCACCCCTACTACCTCTGCTATCACCGCGAGCAGAAGCCAATCACCCACCCCAATTTTAGAAGGCAAGCAGAGCAAGGTGGCAGCCCGGCGAGAGAGCACCGGTCGCCCAATTAAACCACCTAAAAAGGATTTTGAGGATGGTGAACTAGGCGTGCATGGTGGCAAAAAGGGCAGACTTTCAGAACAGCTTAAGTACTGCGATGTCATCCTTAAAGAAATGCTGTCAAAAAAACATGCTGCGTACGCTTGGCCATTTTACAAACCTGTTGATGCAGAGGCTCTCGAGCTGCATGACTACCATGATATAATCAAACACCCCATGGACTTAAGCACAGTAAAAAAAAAAATGGATAGTCGAGAGTACCAGGATGCTCAGACTTTTGCTGCAGATGTGCGATTAATGTTCTCAAATTGTTACAAGTACAACCCACCTGATCATGAGGTGGTTGCTATGGCCAGAAAACTGCAGGATGTGTTTGAAATGCGATTTGCAAAGATGCCTGATGAGCCAGTGGAGGTTCCTGGGGCAGGTGGTGTAGGTGGGGCCGGTGTGGTCAGTAAGAGTACTGTCAGCAGTGAGAGCAGTGGCGACTCCTCCACCTCTGACAGCTCCGACTCTGAGGAGGAGAGGGCCACCCGGCTTGCCGAGCTGCAGGAACAGGTGGGTGCGGAACAGtgtaTCTCTTTGGAGCACCCCATTGGTAGCAGAAAGGGGATAAAAAACGGGTGCACCAAGAATAATCAGCTGAAAGCCGTCCACGAACAGCTAGCTGCTCTTTCTCAGGCCCCTGTAAGTAAaccaaagaaaaagaaagagaagaaagaaaaagataagaaaaagaaagagaacaaGCACAACAAATCCAAGCCAGAGGAAAAAGCCAAGCCGGGACAGCCACCGAAACCAGCCCAGCAGAAAAAGGGTCCCACCAGAAAGGCTAACAGCACTGTTCCAGGAAACAGGCAACCAAAGAAGGGTGGCAGAGGGCCAGGCTATGAGTCTGACGAGGAGATGTCGCTCCCCATGACGTACGAtgagaaacggcaactgagcctcGACATTAACCGGCTGCCTGGAGAGAAGCTGGGTCGGGTGGTCCATATTATTCAGTCCAGAGAGCCTTCGCTGCGTGATTCCAACCCTGATGAAATTGAAATAGATTTTGAGACGCTGAAACCTTCCACTTTGCGAGAGCTGGAGCGATACGTCAAGTCCTGTTTACAAAAGAAACAGAGGAAACCTCCACAGAAAGGAGGTTCTGGTCCGTCTCGGCTCAGCGGCAGCAGCAGTTCCTCAGACTCGGGGAGCAGCAGCTCCAGTGGCTCCACTTCAGACAGCAGTGACTCCGACTGAAcacctttttatttacttttttatttttatttttttttaaaaacattgtatgCAGTCAAGGTTGTTTCCCCTCTGAGACTTtttataagaaagaaagaaaagagacaaTAAAAATGCATCatgtcagaattttttttttctcttggaaATGTCATGAAGAAAATTACAGATTAAAAAAGCAAATTAATAGATTGCTTTTTATTTCCACTGACTCTGAAAGGGATGTCCTGAAGCTGCAAAGAGAGGAAGTCAGTAATTCTCTTCCCTGGCATCCTGGTAATGTTGTACGTTACCATCGCAAAATAAAGCATCCCATCTCACCAGAGAGAGCAGAAAACTGAATGCTCACACTCTTCTCTCCTGATTCAACTTCTGCACCGCTCTgtgttgtatttattgttttgtttttttcgttTTTGCTGTGGCCTCATGTTTTTCCCTATTGGACGCTGTGccattattg
>TCONS_00038414
CTCCGACTCTGAGGAGGAGAGGGCCACCCGGCTTGCCGAGCTGCAGGAACAGGTGGGTGCGGAACAGGTGGGTTTCAAAACAAGGACCAAGTTCCTTTATCCTCTCCAGGCTCAGAGATGTTCTCAGGCCACATGAAATGTCTCAACCTTTTTACACCTCACGCACATGCCATTCTTAATCAATGCTTATTCTCTAAAAAACCTGGAAGGCTTCCACTTTTACAGCAGCACCTTTTTGCTTTCAACTTGTGCACTTGTACAAAGAGCTGTTTTTTTAGCCCTCTACCGCGACCAGCTGCATATATTGGTTTGCATTTTAATCTCAAAATGCCTGGATGTAGATGTAGTAtcatttatgttgttttgtttctgtCTTATTGGAGCTCTATATCACATTTTCTTCccttgccattttttttttaccagtgtaTCTCTTTGGAGCACCCCATTGGTAGCAGAAAGGGGATAAAAAACGGGTGCACCAAGAATAATCAGCTGAAAGCCGTCCACGAACAGCTAGCTGCTCTTTCTCAGGCCCCTGTAAGTAAaccaaagaaaaagaaagagaagaaagaaaaagataagaaaaagaaagagaacaaGCACAACAAATCCAAGCCAGAGGAAAAAGCCAAGCCGGGACAGCCACCGAAACCAGCCCAGCAGAAAAAGGGTCCCACCAGAAAGGCTAACAGCACTGTTCCAGGAAACAGGCAACCAAAGAAGGGTGGCAGAGGGCCAGGCTATGA
>TCONS_00038415
AAGCGACGAGCCACTGGGATTGCCACACGGTAACTCCTTTCCTGAAGCCTTTGAGTCATTATCTGAACCTCTACTCCACCACAGCGTATCTCTGTGTATGATAGATTGACGCGAGTCAATAAAAAGAGGCTCGAGAAGGTGCAGAAACGCTAAGCGTGGATGCTAACTCTGTTAGCTGCGcgccatcttaataggttGAAGGTTGGGTCCTGCAATGGGATATGGTCCCTCTCAGATGACTGAAGagctaaaaaaacagaaaagcatAAAAAAGGCACTCTGAAAATAAGTcttttgcagaataaaaaaacCTTTCCCATTAAGCAGTTTTTCCCCTCTTCACCAAAATGTCAGCTGTCACTTCCGCAACCCCAGAACCTCCTGCAGCCGCAAACCCTCCTCCTCCAGAGGTGATCAACCCTACCAAACCTGGCCGCAAGACTAACCAATTGCAGTACATGCAAAATGTTGTTGTCAAGACGCTGTGGAAGCACCAGTTTGCATGGCCATTTTACCAGCCAGTTGATGCTGTTAAGCTTGGCCTTCCGGATTATCACAAGATCATAAAGAACCCAATGGATATGGGCACCATCAAGAAAAGACTGGAGAGCGTTTACTACTACAGTGCAAGCGAGTGTATGCAGGATTTCAACACAATGTTCACAAACTGTTATATTTACAACAAGcCAACGGATGATATTGTGTTGATGGCACAAGCGTTAGAGAAGATCTTCCTTCAGAAAGTGGCCCTCATGCCCCAGGAAGAGGTTGAGCTGCTTCCACCTGCCCCGAAGGGCAAAGGGCGCAAACCAGCAGGGCCTGGTCAGCAAGATGGAGCCGTCTCCACTGGCTCACCCACATCAGTTTTTCCAGGTGCCACATCGCCGAGTTCACAAACAGCAGTAGTATCTCCAGCTCCAGTGCCCGCTATCACTCCTAGCATACCAGCTGTACAGAACACAACTGCTGCCGCTGTGATACCCAGCATGCCTCCATCACAACCCACGGTTAAAAAAGGGGTAAAGAGGAAAGCAGACACAACCACCCCTACTACCTCTGCTATCACCGCGAGCAGAAGCCAATCACCCACCCCAATTTTAGAAGGCAAGCAGAGCAAGGTGGCAGCCCGGCGAGAGAGCACCGGTCGCCCAATTAAACCACCTAAAAAGGATTTTGAGGATGGTGAACTAGGCGTGCATGGTGGCAAAAAGGGCAGACTTTCAGAACAGCTTAAGTACTGCGATGTCATCCTTAAAGAAATGCTGTCAAAAAAACATGCTGCGTACGCTTGGCCATTTTACAAACCTGTTGATGCAGAGGCTCTCGAGCTGCATGACTACCATGATATAATCAAACACCCCATGGACTTAAGCACAGTAAAAAAAAAAATGGATAGTCGAGAGTACCAGGATGCTCAGACTTTTGCTGCAGATGTGCGATTAATGTTCTCAAATTGTTACAAGTACAACCCACCTGATCATGAGGTGGTTGCTATGGCCAGAAAACTGCAGGATGTGTTTGAAATGCGATTTGCAAAGATGCCTGATGAGCCAGTGGAGGTTCCTGGGGCAGGTGGTGTAGGTGGGGCCGGTGTGGTCAGTAAGAGTACTGTCAGCAGTGAGAGCAGTGGCGACTCCTCCACCTCTGACAGCTCCGACTCTGAGGAGGAGAGGGCCACCCGGCTTGCCGAGCTGCAGGAACAGGTGGGTGCGGAACAGtgtaTCTCTTTGGAGCACCCCATTGGTAGCAGAAAGGGGATAAAAAACGGGTGCACCAAGAATAATCAGCTGAAAGCCGTCCACGAACAGCTAGCTGCTCTTTCTCAGGCCCCTGTAAGTAAaccaaagaaaaagaaagagaagaaagaaaaagataagaaaaagaaagagaa

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0120114 Sm-like protein family complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005048 signal sequence binding molecular_function
GO:0008139 nuclear localization sequence binding molecular_function
GO:0017069 snRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-6141 Acts upstream of or within thrombocyte differentiation. Orthologous to human BRD3 (bromodomain containing 3).

Ensembl:

ensembl_id ENSDARG00000006527

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038413 False 1207 lncRNA 0.44 5 18266319 18272212
TCONS_00038411 False 755 processed_transcript 0.40 2 18266319 18272269
TCONS_00038412 False 2835 mRNA 0.48 12 18266426 18275337
TCONS_00038414 False 749 lncRNA 0.45 3 18269450 18271156
TCONS_00038415 True 1891 mRNA 0.48 11 18269693 18275226

Neighbor

gene id symbol gene type direction distance location
XLOC_019495 vav2 coding downstream 4032 18021087 ~ 18262287 (-)
XLOC_019494 NA coding downstream 252953 17983897 ~ 18013366 (-)
XLOC_019493 stx2a coding downstream 309580 17951286 ~ 17956739 (-)
XLOC_019492 NA coding downstream 317321 17944716 ~ 17948998 (-)
XLOC_019491 BX001031.1 coding downstream 457357 17808847 ~ 17808962 (-)
XLOC_019497 NA coding upstream 112750 18388087 ~ 18390755 (-)
XLOC_019498 TMEM132C coding upstream 322590 18597927 ~ 18824434 (-)
XLOC_019499 BX323088.1 coding upstream 382778 18658115 ~ 18658230 (-)
XLOC_019500 CT027623.1 coding upstream 591639 18866976 ~ 18879623 (-)
XLOC_019501 med15 coding upstream 653982 18929319 ~ 18946648 (-)
XLOC_019489 NA non-coding downstream 729604 17533003 ~ 17536715 (-)
XLOC_019488 NA non-coding downstream 740381 17501581 ~ 17525938 (-)
XLOC_019509 NA non-coding upstream 1356914 19632251 ~ 19685914 (-)
XLOC_019510 BX927394.2 non-coding upstream 1416900 19692237 ~ 19714726 (-)

Expression


Co-expression Network