XLOC_019500 (CT027623.1)


Basic Information

Item Value
gene id XLOC_019500
gene name CT027623.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 18866976 ~ 18879623 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038420
GCCGAGATTCTCGCATGCTTCGGGGATTCGCAGTATCGTAGTTGCATTTGTTGTGGGcattgttaatgttttcaaacacCTAAAGGCTGACTAGATTAACGAAACCCTTGAAGGTTTCTTGAGGGCCGCTGTGGtgctgagtttagctctaacttgcttcaacacacctgccctggggtttctagtatatctagtaagaacttgattagctgcttcaggtgtgtttgattagggtgacccgagtttggacacccctgcattagagggagagtaaataGATGGCCTGATGCCTGTAGTCAGTTGGATGATTATATACACTAGATGCCTTGATTCTGCATGAATGGGGGATTAACCACTAGAAGGTCCATTCAAAGGATTCTAGAAATTGTACCAATTCCAGTCTGGATCCAGCCTACCTGGTGAACACCACAGAAGACATCAAAGCTAATGAGTTTAGATAACTAGAACTGGACAAACAGAGTTGGCAAAAATCAAAGCAAACACCACtacattactatattattattaaaacaataaaaatataaaagagatAGATGGACTTGGTGAGATTTACCTGTTTTGTGATGATTTTGTTTAGCTGTAGATTTAAATATCCATTGAGGAAAAATATTTGCACCATTAAGAACTGATCATATTGATCTCTGTTGCTATCTTATGGCGGAACAATGTAACGCCAAACTGCCAAAGAATTTCCATTAAATA
>TCONS_00038419
GCCGAGATTCTCGCATGCTTCGGGGATTCGCAGTATCGTAGTTGCATTTGTTGTGGGcattgttaatgttttcaaacacCTAAAGGCTGACTAGTTTGAGGTACATCCGTTATCTTCAACCAGAATGAAGGCAGTGTTTCATCTTTGTGGCCCTCGCATATGAGCTTATGTAGAATTTGAATTTTCCATAAGCTGTTTGTCTGTCTACTTGGATTCACTCAGGGTTTCAAGATGGCTCTCAAAAAGGAGTGTACTACAAGGTGCAGGCGAAAATCATCGCTTATGCTGTTAGATAGTAGATTAACGAAACCCTTGAAGGTTTCTTGAGGGCCGCTGTGGtgctgagtttagctctaacttgcttcaacacacctgccctggggtttctagtatatctagtaagaacttgattagctgcttcaggtgtgtttgattagggtgacccgagtttggacacccctgcattagagggagagtaaataGATGGCCTGATGCCTGTAGTCAGTTGGATGATTATATACACTAGATGCCTTGATTCTGCATGAATGGGGGATTAACCACTAGAAGGTCCATTCAAAGGATTCTAGAAATTGTACCAATTCCAGTCTGGATCCAGCCTACCTGGTGAACACCACAGAAGACATCAAAGCTAATGAGTTTAGATAACTAGAACTGGACAAACAGAGTTGGCAAAAATCAAAGCAAACACCACtacattactatattattattaaaacaataaaaatataaaagagatAGATGGACTTGGTGAGATTTACCTGTTTTGTGATGATTTTGTTTAGCTGTAGATTTAAATATCCATTGAGGAAAAATATTTGCACCATTAAGAACTGATCATATTGATCTCTGTTGCTATCTTATGGCGGAACAATGTAACGCCAAACTGCCAAAGAATTTCCATTAAATA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0071599 otic vesicle development biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0072176 nephric duct development biological_process
GO:0048568 embryonic organ development biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0071696 ectodermal placode development biological_process
GO:0014029 neural crest formation biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0039022 pronephric duct development biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094538

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038420 False 723 lncRNA 0.39 4 18866976 18879623
TCONS_00038419 True 928 lncRNA 0.40 5 18866976 18879623

Neighbor

gene id symbol gene type direction distance location
XLOC_019498 TMEM132C coding downstream 42542 18597927 ~ 18824434 (-)
XLOC_019499 BX323088.1 coding downstream 208746 18658115 ~ 18658230 (-)
XLOC_019497 NA coding downstream 476221 18388087 ~ 18390755 (-)
XLOC_019496 NA coding downstream 591639 18266319 ~ 18275337 (-)
XLOC_019495 vav2 coding downstream 604689 18021087 ~ 18262287 (-)
XLOC_019501 med15 coding upstream 49696 18929319 ~ 18946648 (-)
XLOC_019502 pimr72 coding upstream 91234 18970857 ~ 18972206 (-)
XLOC_019503 mpp4l coding upstream 97000 18976623 ~ 18993110 (-)
XLOC_019504 pgam2 coding upstream 122046 19001669 ~ 19006641 (-)
XLOC_019505 nefma coding upstream 134227 19013850 ~ 19018455 (-)
XLOC_019494 NA non-coding downstream 853610 17983897 ~ 18013366 (-)
XLOC_019492 NA non-coding downstream 917978 17944716 ~ 17948998 (-)
XLOC_019509 NA non-coding upstream 752628 19632251 ~ 19685914 (-)
XLOC_019510 BX927394.2 non-coding upstream 812614 19692237 ~ 19714726 (-)
XLOC_019511 BX927394.3 non-coding upstream 867247 19746870 ~ 19752717 (-)
XLOC_019513 NA non-coding upstream 961875 19841498 ~ 19842107 (-)
XLOC_019524 NA non-coding upstream 1855746 20735369 ~ 20741880 (-)

Expression


Co-expression Network