XLOC_001956 (si:ch211-126i22.5)


Basic Information

Item Value
gene id XLOC_001956
gene name si:ch211-126i22.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11309814 ~ 11310769 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003837
AGTAGAGCTTCATCCACTGGAAAGGCAGAGGAGCATCAAGATTTCCTCAAAGAGAAGCAGAGATGGCGAGAACACTCGTGTCCGAATGAAAAACGTTGTGGGGGTTATTGCACGATATATGGCTGCGCTGCAAGAGTTCCGACGTAGCGTCTCCATGAAAGTGGCGTTTGACAGAGTCGGTGTGGACCGCAACACCATTTCCAGGACAGCAGCCATTGCGGAGCTCAGTTTGGCAGCCCCTGAAATCTTCCACGCCCTTCCACCATGGGACGAAAAGGAGGAAACATTGGCACATTATGCCATCAGGTGCCGACAGGCCATGGATGACAGCATTAAAGCcaagattaaaaacatgaaagCTAAAGGAGAACTTCTACCAATCGTCAGCAAATAAAGTACAAAGTTTATGTTTACTTTCTCAGATTTCCAGTGGATGTGACCACTCTAATTGAACACTATTTCCAGGTTTGGCCTTGATTTTTATTGTTGCCATGCTCAATCACAAAGTGAATAGTATATGGCAGCATAGTTGTTTTATATGTTCAAGCAGTTGTTGTGTTGATCATCTTGGCTTCTAAATGAAATAAAGCATAGTTGTTTTGTATGCCTTACAGTGTCATTTTGCCTGACCAGTATTTATTTCGGTGTTAAGCATTCTGTATGATCGCATGCTTATTTCTATCACAAACTACAGTGGGTCTTTGTAATTTTTACAGTGCCACCTCTTCTTTTTCAAGTGTCAGATTAGTGTTGTGTAAAAAGATTGCAAAGACTGTGAAAAATAGGTGTGTAATTATCTTACGCTGCACAGTGGGTCCAATGATTATGATGTGAGTAATAAATATAACGTCACAATGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000060911

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003837 True 858 mRNA 0.41 2 11309814 11310769

Neighbor

gene id symbol gene type direction distance location
XLOC_001954 CR931761.1 coding upstream 193844 11115854 ~ 11115970 (+)
XLOC_001953 ugcg coding upstream 215687 11038192 ~ 11094127 (+)
XLOC_001952 cdc37l1 coding upstream 311315 10972795 ~ 10998499 (+)
XLOC_001951 ambp coding upstream 485528 10801564 ~ 10824286 (+)
XLOC_001950 ptgdsa coding upstream 512878 10788811 ~ 10796936 (+)
XLOC_001957 cops4 coding downstream 45072 11355841 ~ 11372541 (+)
XLOC_001958 cwc27 coding downstream 87342 11398111 ~ 11501424 (+)
XLOC_001959 BX640403.1 coding downstream 187924 11498693 ~ 11498809 (+)
XLOC_001960 NA coding downstream 202617 11513386 ~ 11518739 (+)
XLOC_001961 NA coding downstream 341825 11652594 ~ 11665963 (+)
XLOC_001943 NA non-coding upstream 1014025 10288148 ~ 10295789 (+)
XLOC_001941 AL935269.1 non-coding upstream 1114212 10178101 ~ 10195602 (+)
XLOC_001940 BX248503.1 non-coding upstream 1396637 9913063 ~ 9913177 (+)
XLOC_001939 NA non-coding upstream 1414271 9890691 ~ 9895543 (+)
XLOC_001963 CR925713.2 non-coding downstream 463636 11774405 ~ 11774519 (+)
XLOC_001964 NA non-coding downstream 615304 11926073 ~ 11927986 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G420542 NA non-coding CI01000304 null 4916135 ~ 4916905 (+)