RNA id: TCONS_00003837


Basic Information

Item Value
RNA id TCONS_00003837
length 858
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_001956
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11309814 ~ 11310769 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTAGAGCTTCATCCACTGGAAAGGCAGAGGAGCATCAAGATTTCCTCAAAGAGAAGCAGAGATGGCGAGAACACTCGTGTCCGAATGAAAAACGTTGTGGGGGTTATTGCACGATATATGGCTGCGCTGCAAGAGTTCCGACGTAGCGTCTCCATGAAAGTGGCGTTTGACAGAGTCGGTGTGGACCGCAACACCATTTCCAGGACAGCAGCCATTGCGGAGCTCAGTTTGGCAGCCCCTGAAATCTTCCACGCCCTTCCACCATGGGACGAAAAGGAGGAAACATTGGCACATTATGCCATCAGGTGCCGACAGGCCATGGATGACAGCATTAAAGCcaagattaaaaacatgaaagCTAAAGGAGAACTTCTACCAATCGTCAGCAAATAAAGTACAAAGTTTATGTTTACTTTCTCAGATTTCCAGTGGATGTGACCACTCTAATTGAACACTATTTCCAGGTTTGGCCTTGATTTTTATTGTTGCCATGCTCAATCACAAAGTGAATAGTATATGGCAGCATAGTTGTTTTATATGTTCAAGCAGTTGTTGTGTTGATCATCTTGGCTTCTAAATGAAATAAAGCATAGTTGTTTTGTATGCCTTACAGTGTCATTTTGCCTGACCAGTATTTATTTCGGTGTTAAGCATTCTGTATGATCGCATGCTTATTTCTATCACAAACTACAGTGGGTCTTTGTAATTTTTACAGTGCCACCTCTTCTTTTTCAAGTGTCAGATTAGTGTTGTGTAAAAAGATTGCAAAGACTGTGAAAAATAGGTGTGTAATTATCTTACGCTGCACAGTGGGTCCAATGATTATGATGTGAGTAATAAATATAACGTCACAATGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000145673

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005834 lncRNA upstream 47928 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00003828 lncRNA upstream 322512 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005833 lncRNA upstream 486366 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA upstream 486366 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003822 lncRNA upstream 492184 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00005688 lncRNA downstream 202617 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 341825 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 341980 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005690 lncRNA downstream 615304 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA downstream 615304 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00003836 mRNA upstream 11211 11286925 ~ 11298603 (+) True XLOC_001955
TCONS_00003833 mRNA upstream 26575 11265387 ~ 11283239 (+) False XLOC_001955
TCONS_00003831 mRNA upstream 29231 11260170 ~ 11280583 (+) False XLOC_001955
TCONS_00003832 mRNA upstream 32991 11261576 ~ 11276823 (+) False XLOC_001955
TCONS_00003829 mRNA upstream 215687 11038192 ~ 11094127 (+) True XLOC_001953
TCONS_00003838 mRNA downstream 45072 11355841 ~ 11372541 (+) False XLOC_001957
TCONS_00003839 mRNA downstream 45115 11355884 ~ 11368476 (+) True XLOC_001957
TCONS_00003840 mRNA downstream 87342 11398111 ~ 11501424 (+) True XLOC_001958
TCONS_00003842 mRNA downstream 457022 11767791 ~ 11788565 (+) True XLOC_001962
TCONS_00003845 mRNA downstream 1206290 12517059 ~ 12730451 (+) True XLOC_001967
TCONS_00003830 other upstream 193844 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 322512 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003825 other upstream 486366 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003821 other upstream 506458 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003803 other upstream 1396637 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003841 other downstream 187924 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003843 other downstream 463636 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003844 other downstream 1022484 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003853 other downstream 2546023 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 2620079 13930848 ~ 13931718 (+) True XLOC_001973

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU483034 True 771 lncRNA 0.40 1 CI01000304 4916135 ~ 4916905 (+)