RNA id: TCONS_00003831


Basic Information

Item Value
RNA id TCONS_00003831
length 2998
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_001955
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11260154 ~ 11312342 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agccaatatatggtcaaccatttggtacaGCATGCAGTTAAAGCGTTAATAATTATGAGATGGGGTGTTTTatgataatttaataaaaatgcatacgatttatattttaaatatattaacaatgcaataaataaatctgaCACAAGACCCATGCTACAAAGATAACCAACACCCTTTATTTCTGCATGCTTTAATTGCGCGCATAAAACCATCAAATATGTCAGGGAGCGCGCGCGCGTGACGTATTGAATCTCTGATTTGATTGTTTTGAAAAGTACTGCTCAAAGGAATCGATTCGAGGAAATGAGTCAAATGAAAGCAACAACAATAAGTGGGTGAAATATAACCAGTGCACCACACAGTCCTCAGCCTTCATCTTTGGCCACGCACACGAGTGTAAACAATGACATTTAATCACACATGATAGAGAAAGTATGCGCTAAATAAAACGCTCGTGCTCGCCATACTGTAAACGCGCGACTGCGTACAATGGACGCGTGCTGTTTATGGCTCTGCAAAAAGTCGCTAAACCTAATTTCGCGATATAAAACACAACCGCCGCGTTATTATTtcacaattcacacataaaacccAGTTCAGGGCGATGGTGGGCGAAAGCAGTCGCGTTTAGCGTCAGGAAACACCGTTTTCTAGACAGAATCGCTCCAGAAACGCCCCTTCGTGGTTTTAAAATGGCAGCAGCACATGAGGAGCTCTTATTTCCTTAATTCTCAGCACTTCTTGGATACATTCACCTACAGCTCATGGTTCGGATACACAACAGCAAAGTCTAAAAGCAAAGCAGGGATGATTGTataacaaaaacaacacgcaCACAAAAATATGAATCCCAAACAAACCCACTTCCTTGAATGTAACTTTGATCATAATGCTATATACGCCCATATTTTGCATATCAACAACAGCGAGCGACCATCACACAAGCGGCGGGCTCATCATCATTTTAATGCAGACCCCAAAATCAGAAAGTGAAAGACTGACACTTCATATTTGCATttgaataaacagaaaacaagtAAACAGCATCTCCAGCGTTTTGCTCCCTCCCCCACTTTTCCTCCCATGCCATTTCTGACGtgctattattatcactatacaataatgcaaacacTCAATAAAAGCACACAACTCAAAAAGCGCGTGGTGTaaggaataaaaacaaacaagtaagaCGTATTGTAAACTCACATACCCATCCATTGCACAGAGCAAAACAGAGGCGAGGTGAAATAACAATGCAAGCACAGGGAAATGAAGAAACGGGTGTTGCTGTTACTACAGTTCGACTCCCCAACACAAATTCACTCGCTCAAGCACAAAGGCACGCACACACTTCCTGCTCCTgacgcgaacacacacacacacacacacacacacgtacagacGCTTCTCTGTACAAAATGGCCTCCCCCTTTCAGCAGACACACCTTTGAAGAGCCgcCTACCGGAAGTACTGCACTCGCTGTGGATTCTGTTTCTAGAGTAAAGGGCGACTCACATCCAGACGTTCAGTGTTGAGTTTAATGTGTCACCAGGAGCCCCTCTGGATCATTGCGTTCCCATATCAGACATCATCCAGGAGACACAATAATGCTGCAGAACACAGGgaAGTTAGCAGGATGCACCATTTTCATCACCGGAGCAAGTCGAGGTATTGGCAAGGCCATTGCTCTGAAAGCTGCGCAGGATGGAGCCAATGTAGTCATCGCTGCCAAAACAGCTGATCCACATCCCAAACTCCCCGGCACCATCTACACAGCTGCAGCAGAGATTGAAGCAGCTGGAGGGAAAGCACTGCCGTGTATTGTGGACGTCCGTGATGAGAAGCAGATCAATGATGCTGTTGAACAGGCTGTGGAGAAGTTTGGAGGGATTGACATATTGGTCAACAATGCCAGTGCCATCAATTTAACAGGGACTCTTCAGACTCCAATGAAAAAGGCTGACCTCATGCTGGGCATCAATCTCAGGGGAACATACCTGACGTCTAAACTGTGCATTCCACATCTTCTGAAGAGCAAAAACCCTCACATACTAAACCTCAGCCCACCTCTCAACCTCAACCCCATTTGGTTCAAAAACCACACGGCTTACACCATTGCAAAGTATGGCATGTCCATGTGTGTACTGGGAATGGCAGAAGAGTTCAGAGGATCCATTGCCGTTAATGCCTTATGGCCAAAGACAGCCATTCAGACGGCTGCCATGGACATGTTGGGCGGTTCTGAGGTTGGCAAGCAGTGCAGGAAGGTGGAGATCATGGCTGATGCAGCATACGCCATCTTCAAACAACCCACCAGCTTCACCGGACAGTTTGTTATTGATGAGGACATTCTCAAAAAGGAGGGCATTAAAGATTTTGATGTTTATGCTGTTGAGCCAGgtcaTCCATTGCTTCCTGACTTTTTCTTGGACGGCCAGCCTGAGGATCTAGTCAAGCATATGGAGGCACATGGTGCCACTCCGGCGTTCACAACTGCAAAAGCAGATCCCGTTGCCGCAGGACCAGTTTCTGAGATGTTCAATACAATCAGAGGAATTATCAGTCCAGAGATGGTGAAAACCACACAAGGAGTGTACAAATTTAACTTGGCAGGCGAGCATGCTGGAGTCTGGTATCTTGACCTGAAGAACGATGCTGGAAGTGCTGGAAATGGGGAACCTCCTGTCAAAGCTGATGTTGTCATGTCGATGGACAGTGAGGATTTTGTCAAGATGTTTGGAGGGAAATTAAAGCCAACCATGGCCTTCATGTCTGGAAAGCTGACTATTAAGGGTGACATGGGCCTTGCCATCAAACTGGAGAAGATGATGGCCATGATGAAGTCTAAACTGTGAACACATCACGCAGTCTCCTGCCTTACAAGATGTACATGATGACCTCTTTTCTATATCAGTGTtttttgattaaactaattgTTCAGATTGTACTAATTTTAATAAAGAACTATCAGGTAGTTATAGTTTCTTTACTTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-1066 Predicted to enable oxidoreductase activity. Predicted to be located in peroxisome. Predicted to be active in mitochondrion. Orthologous to human HSDL2 (hydroxysteroid dehydrogenase like 2).

Ensembl:

ensembl_id ENSDART00000155742

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003828 lncRNA upstream 272868 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005833 lncRNA upstream 436722 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA upstream 436722 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003822 lncRNA upstream 442540 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00003816 lncRNA upstream 522920 10728995 ~ 10737250 (+) True XLOC_001948
TCONS_00005688 lncRNA downstream 232803 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 372011 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 372166 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005690 lncRNA downstream 645490 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA downstream 645490 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00003829 mRNA upstream 166043 11038192 ~ 11094127 (+) True XLOC_001953
TCONS_00003826 mRNA upstream 261671 10972795 ~ 10998499 (+) False XLOC_001952
TCONS_00003823 mRNA upstream 435884 10801719 ~ 10824286 (+) False XLOC_001951
TCONS_00003820 mRNA upstream 436298 10801564 ~ 10823872 (+) False XLOC_001951
TCONS_00003819 mRNA upstream 463234 10788811 ~ 10796936 (+) True XLOC_001950
TCONS_00003834 mRNA downstream 2300 11282883 ~ 11312342 (+) False XLOC_001955
TCONS_00003835 mRNA downstream 6158 11286741 ~ 11312342 (+) False XLOC_001955
TCONS_00003836 mRNA downstream 6342 11286925 ~ 11298603 (+) True XLOC_001955
TCONS_00003837 mRNA downstream 29231 11309814 ~ 11310769 (+) True XLOC_001956
TCONS_00003838 mRNA downstream 75258 11355841 ~ 11372541 (+) False XLOC_001957
TCONS_00003830 other upstream 144200 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 272868 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003825 other upstream 436722 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003821 other upstream 456814 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003803 other upstream 1346993 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003841 other downstream 218110 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003843 other downstream 493822 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003844 other downstream 1052670 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003853 other downstream 2576209 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 2650265 13930848 ~ 13931718 (+) True XLOC_001973

Expression Profile

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