RNA id: TCONS_00003826


Basic Information

Item Value
RNA id TCONS_00003826
length 2390
RNA type mRNA
GC content 0.42
exon number 8
gene id XLOC_001952
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10972795 ~ 10998499 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agagAGACACCGCCACTGGTGCTGTAGCTTGAAAATAACTCTCTTCGCTCGCTAACACGCTACCGATTAGTATCTGTTTTCCCGGCTATACGCCTATAAACGCAGCAGAACAGGTCCCGGAGCTCCAGTACTGAACTCCAGCAGCGGGATGGAGTGGTTTGGAGGCGGCATGTGCCAGCCTGAACAGGACCGAAAGGAAAATATGCCCTGCACACACCCACACGAGGCAAGTGCGGAGAGCATGGCGTCTCTGTGTCAGCGGCAGCAGCACTGTGTGAAGGCCTCCATCGCATCAGAGTGGCAGCTGGCAGAAGCGCAGGATCAGCTCTGCGGTCTGGAGCTCCACAGCTCCGAGTCTGTGGAGCAGGAGAGAGCCCGAGCACTGGCCTCCTCCACTGAACTCTCGCACACTGAACACCAGTGGAGGCTCAAAGAGAGGATGCTGGGCACGCTGTGTCCTGAAGCCAACCGGGATGTGTTTGACAAGagTATCATAAACATTACACAGTCTTGGCCAAATGAATCTGATCCAGATAAAAGCTTAAACTTCGTCCAGCGCAATGAAGAGCTCCTGAAACATTTTGGTATGCTGGGAAGGTGGGATGACAGTCAGCGCTTTCTAGCAGAATATCATCACCTCATCTGTGAAGAAACAGCCAATTACCTGATCCTGTGGTGCTTCCGGCTACAGGCAGAGAAGAAAGAGGCCTTAATGGAGCAGGTTGCTCATCAGGCTGTGGTCATGCAGTTTATTCTAGAAATGGCTCGTAACACTCAGCAGGACCCTCGAGGCTGTTTCCGTCACTTCTTTCAGAAAGCCAAAGCCGGACAGGAGGGCTATTTGGACGTGTTTCACACAGAACTCCAAGCCTTTAAGGACAGAGTTAAAGAGTACACTATGAAATCAACAGGAGAAACGCCAAAGGATACAGTTCACCAAAATACACCGCCAGCCTGTTGTCTCGACCCCAAGGAGGTGTTTGAGTCTTTGCCACAGGAGCTGAAAACGTGCATCCAGATGCAAGACATGCAGATTCTTCAGAATGTGCTGAGCAGCATGAACCCACAGGTGGCAGAATATCATGTGAAGCGTTGCTTGGAGGCAGGACTTTGGACAAATATACCACGAACATCCAAAGACGAGAGTTCAGAAGTGGACGAATGGAAAATGATGGAAACCTAACAGTGAAAAAACACTCAAGACTTTCAATCCATCATCTAACTTTAATAGGAAAGAGGCTTTGAGTCAAGGGACAAGAAGAACAAGGGCTGTGCTCAAAGACTTGTGTTTGGTATCCGTGCCTGATCGTGTGCTGcactttatatttgtttaaaagagAAAGTATTTTAAGGAAACTGTACTTATATTTTTGTgcatattttgttacattttggtTCGGTTGCTGATTGGTTTTATGCAGTTCGAAAGAAAACTAGGAAAGTGGTACGAGTAGaccttattgttttgtttttttcaagtaGGTTTTAACCAGTGACATTTAAGAGGACGTTTCTTTTTGGTTTGAATGTTTCGTATCTACACTTCTGGATTGTAATATTCTAGGTCCACCGAACATTCAACTTTAGCTGCTATCTGGGAATTGTTTCATGTGTCATCTGTGTATGGACGCAGCAGATAACAGGCTTTCCTGCTGATAGAGAAACCACACAAAGGCAAGGCAGGACCACCCACTTTGCTATCTGTTTGCTACTAGTACAAACTCGGTTTGCAATGAGAATGGAAATAGCATTTGCCATGAAAATCAAACAATTTAAAGTGATGTGCATTCACTTCTTCGGAATAGGTTGTTATGTTTAAAGTCATAAGTGACAAATGCTGAATAGTTAAGAAAAATTACAAATGAAAAGtatattctgtcattatttaaaaaaaaaaagaacacttttttttttgaaccccattgactttcaatataaaaccaacaccaggaactatccttttaaatatctATTTTAATCTTTCTGCTGATTAAATGAAGTCAAACATGTTTAGAACAACAGGAGGATATATGTAATATCTATTTTGCTCTTTCCATACGGATTTAGAACAACACAAGAATGTGGGAATAATGTCAGAACTATCATGTTTGAATAACTTATCCCTTGCCTAGTGAATGGAGTATGAAAACGACATATTTTGGACCTCATTGAATTTTgttaaattatcaaaaaaatatttaatagtcAATTTATTTAGCAATGTTCAAAGAAAATAAAGTAATACAATGTTAGAACAACACAACAATGTGGGAATAATGTCAGAATTATCAtgtttggttgaactatcctCTCATTCAATAGGGACCAAAAACAACATCTTTTGGGCCCCATTGAGTTtcattcaattttaaaataaaaaaaagattaaa

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0050821 protein stabilization biological_process
GO:0005737 cytoplasm cellular_component
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8865 Predicted to enable chaperone binding activity; heat shock protein binding activity; and unfolded protein binding activity. Predicted to be involved in protein folding and protein stabilization. Predicted to be active in cytoplasm. Orthologous to human CDC37L1 (cell division cycle 37 like 1).

Ensembl:

ensembl_id ENSDART00000127331

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005833 lncRNA upstream 149347 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA upstream 149347 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003822 lncRNA upstream 155165 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00003816 lncRNA upstream 235545 10728995 ~ 10737250 (+) True XLOC_001948
TCONS_00005832 lncRNA upstream 677006 10288294 ~ 10295789 (+) True XLOC_001943
TCONS_00005834 lncRNA downstream 261655 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00005688 lncRNA downstream 514887 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 654095 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 654250 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005690 lncRNA downstream 927574 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00003823 mRNA upstream 148509 10801719 ~ 10824286 (+) False XLOC_001951
TCONS_00003820 mRNA upstream 148923 10801564 ~ 10823872 (+) False XLOC_001951
TCONS_00003819 mRNA upstream 175859 10788811 ~ 10796936 (+) True XLOC_001950
TCONS_00003818 mRNA upstream 176619 10788811 ~ 10796176 (+) False XLOC_001950
TCONS_00003817 mRNA upstream 189985 10738880 ~ 10782810 (+) True XLOC_001949
TCONS_00003829 mRNA downstream 39693 11038192 ~ 11094127 (+) True XLOC_001953
TCONS_00003831 mRNA downstream 261671 11260170 ~ 11280583 (+) False XLOC_001955
TCONS_00003832 mRNA downstream 263077 11261576 ~ 11276823 (+) False XLOC_001955
TCONS_00003833 mRNA downstream 266888 11265387 ~ 11283239 (+) False XLOC_001955
TCONS_00003834 mRNA downstream 284384 11282883 ~ 11312342 (+) False XLOC_001955
TCONS_00003825 other upstream 149347 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003821 other upstream 169439 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003803 other upstream 1059618 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003802 other upstream 1246904 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003791 other upstream 1624289 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003830 other downstream 117355 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003841 other downstream 500194 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003843 other downstream 775906 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003844 other downstream 1334754 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003853 other downstream 2858293 13856792 ~ 13894856 (+) True XLOC_001972

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_05098315_05108511.mRNA True 1644 mRNA 0.45 7 CI01000304 5097637 ~ 5108511 (-)