RNA id: TCONS_00003822


Basic Information

Item Value
RNA id TCONS_00003822
length 809
lncRNA type sense_over
GC content 0.45
exon number 6
gene id XLOC_001951
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10801564 ~ 10824286 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACGAACAGAAGGATGCGTGTGTTTTTGCTGTTTCTGCCTCTGCTGGGGCTCCTGGAGGCTGGACCTCTGCCGGATGAGCCCGTCCTGCAGACACAGGAGAACTTCAATGTCAATCGGTTCATGGGGAAATGGTATGATATTGCGGTGGCGTCCACATGTCCTTGGATGAAGCGTCATAAAGGAGACGCAGCCATTGGTTCTCTGGAACTGCAGTCCAGCGGGTCACCACAAAGCCTCAGCATGACCCGCATCGGCCTCAGACGTGGGACCTGTAAGTCCATCAGTGGAGAATATCAGCTGACCAAAACACCTGGAAGATTCCACTACCACAGTGCCAAGTGGAATTCTGATGTGGACGCCTACGTAGTGCATACTAACTATAATGAGTACGCTCTGGTGGTGATGTTAAAACAAAAACCAGGAGGTGAAAAATCAACATCTGTCAAACTCTACgGACGTACTATGGAACTGCGGCCCACACTTATTGAAGACTTCAAGACTCTGGTGGCAGAACAAGGAATGAGTGAAGACACTATCATAATTAAAAAGAACAAAGGTGAATGTGTTCCAGGTGAAGAGACCACACCAGAGCCACAGATTCAGGTCAAGGCTTTATGATCCCTGACAAACACACATGATAGACACCACACAACaatactttacaaaaataaagagtATTTTATAGAGGTCTTTgattatgatttaatttttttgtttgtttttgtttactgtgTAATGATGCAGTTTGAGCATAAAGAACATCTGCAAATTTACAACACTCAAAGTTCAGTGCAAGAGGAGATCTTT

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003816 lncRNA upstream 64455 10728995 ~ 10737250 (+) True XLOC_001948
TCONS_00005832 lncRNA upstream 505916 10288294 ~ 10295789 (+) True XLOC_001943
TCONS_00005687 lncRNA upstream 505957 10288148 ~ 10295748 (+) False XLOC_001943
TCONS_00003804 lncRNA upstream 606103 10178101 ~ 10195602 (+) False XLOC_001941
TCONS_00005686 lncRNA upstream 614447 10178168 ~ 10187258 (+) True XLOC_001941
TCONS_00003828 lncRNA downstream 162603 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005834 lncRNA downstream 442524 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00005688 lncRNA downstream 695756 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 834964 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 835119 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00003819 mRNA upstream 4769 10788811 ~ 10796936 (+) True XLOC_001950
TCONS_00003818 mRNA upstream 5529 10788811 ~ 10796176 (+) False XLOC_001950
TCONS_00003817 mRNA upstream 18895 10738880 ~ 10782810 (+) True XLOC_001949
TCONS_00003815 mRNA upstream 64455 10728870 ~ 10737250 (+) False XLOC_001948
TCONS_00003813 mRNA upstream 100936 10636237 ~ 10700769 (+) False XLOC_001947
TCONS_00003826 mRNA downstream 155165 10972795 ~ 10998499 (+) False XLOC_001952
TCONS_00003829 mRNA downstream 220562 11038192 ~ 11094127 (+) True XLOC_001953
TCONS_00003831 mRNA downstream 442540 11260170 ~ 11280583 (+) False XLOC_001955
TCONS_00003832 mRNA downstream 443946 11261576 ~ 11276823 (+) False XLOC_001955
TCONS_00003833 mRNA downstream 447757 11265387 ~ 11283239 (+) False XLOC_001955
TCONS_00003803 other upstream 888528 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003802 other upstream 1075814 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003791 other upstream 1453199 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003779 other upstream 1921579 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 1932810 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003825 other downstream 5125 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003827 other downstream 155180 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003830 other downstream 298224 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003841 other downstream 681063 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003843 other downstream 956775 11774405 ~ 11774519 (+) True XLOC_001963

Expression Profile

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