RNA id: TCONS_00005687


Basic Information

Item Value
RNA id TCONS_00005687
length 787
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_001943
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10288148 ~ 10295789 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTATTCTAaaagttttatgtttttaaattgtttgaaTATAATGTATACATAAACATGTCTGTGATATATTGTTTGCAGATGATTTTATTAAGATTAAGTAGTAGGCTTACTATAGACAGTGAACGTTGACAGCTTGATTTTACAAACTGATAGTTTGTAGACGGTCCCTCAAAAAAGCGATGACGTCACCTCCTTCATAGAGGTAAGCGTGTTTTTCTACTCCTTTAAAACGCCGAGTTTGACAGAAAAGTGTGGCGTACATTTTGCTCATAATCGACTACAACGctgTGTCAGTCAGAGAGAGGTCCACCAGGCGCTGCTGGCAGAGCGGCACACTGATGCAGACAGAGGCCCACTGAATGCCCACTCAGCGCACAAAGACCCACCCGAGCTGCCTGTCACACACCACTGTGCCCAAAAATACTGAGGAAATGCAGATGAAAATCTCTTATTGTGGTCTGTGAACTTACAAAAtaggacacacactctctctactCTGAAAAAGAACGGGACCGCATCAGTGCCAGAATGGGGAAGATTAAACAGTATATTAAGAGCACATTGGTTTGACATAAGTAAGATTCCTTAAATTTCGTTTAAACATGACTGATACTGCTGCAAATATAATCTGTTTCagtgcatttacactgaaaaaaattttgtcgaagatgattccttggatttacaattttttaatgtggttgtaaacaatttatttgggctgaataaatccaacaaattaagttaaaaattactaaatttaatttgtttgttgaaattcaaaatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003804 lncRNA upstream 92546 10178101 ~ 10195602 (+) False XLOC_001941
TCONS_00005686 lncRNA upstream 100890 10178168 ~ 10187258 (+) True XLOC_001941
TCONS_00005685 lncRNA upstream 392605 9890691 ~ 9895543 (+) True XLOC_001939
TCONS_00005831 lncRNA upstream 452702 9823197 ~ 9835446 (+) True XLOC_001938
TCONS_00005683 lncRNA upstream 626252 9649604 ~ 9661896 (+) False XLOC_001935
TCONS_00003816 lncRNA downstream 433247 10728995 ~ 10737250 (+) True XLOC_001948
TCONS_00003822 lncRNA downstream 505957 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00005833 lncRNA downstream 521166 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA downstream 521166 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003828 lncRNA downstream 684485 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00003805 mRNA upstream 13986 10210455 ~ 10274162 (+) True XLOC_001942
TCONS_00003801 mRNA upstream 477551 9697097 ~ 9810597 (+) True XLOC_001936
TCONS_00003799 mRNA upstream 632328 9595575 ~ 9655820 (+) False XLOC_001935
TCONS_00003798 mRNA upstream 638413 9595575 ~ 9649735 (+) False XLOC_001935
TCONS_00003800 mRNA upstream 643429 9601587 ~ 9644719 (+) False XLOC_001935
TCONS_00003806 mRNA downstream 17276 10313024 ~ 10326025 (+) False XLOC_001944
TCONS_00003807 mRNA downstream 17296 10313044 ~ 10325944 (+) True XLOC_001944
TCONS_00003808 mRNA downstream 55937 10351685 ~ 10380131 (+) True XLOC_001945
TCONS_00003811 mRNA downstream 90687 10386435 ~ 10564968 (+) False XLOC_001946
TCONS_00003810 mRNA downstream 90687 10386435 ~ 10564968 (+) False XLOC_001946
TCONS_00003803 other upstream 374971 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003802 other upstream 562257 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003791 other upstream 939642 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003779 other upstream 1408022 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 1419253 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003821 other downstream 505957 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003825 other downstream 527007 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003827 other downstream 677062 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003830 other downstream 820106 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003841 other downstream 1202945 11498693 ~ 11498809 (+) True XLOC_001959

Expression Profile

//