RNA id: TCONS_00003810


Basic Information

Item Value
RNA id TCONS_00003810
length 6851
RNA type mRNA
GC content 0.41
exon number 21
gene id XLOC_001946
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10386435 ~ 10564968 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatgtatgtaggTTAActaactgtatgtatatactcACAATACAATTCATTCCACCTTTAAATTAGAACTACAATTAGACCTCTGTTGGTGGGTGGAGAGTGTACTCTAGGGTTATCATGTCTATTTGGCAGTTTCCAGCCAAAAGATCTCAGCTGCAGGCAACACAACATTTAAGCTGCCTTGTGCACTAAACAGCAGCACCAAGTCTGCAACAGCAAATTCATTTcttgtgtttttttccttttctcaAGTGGATATATTCATTTGACAGGGGCCATGGCCTTCTTAGGAACAGCAGCATGGAGGGCGATGGTGTGTCGGCAGCCCCTCTCGCCCCTCTGCCGTGCTACCACCCGCTGCTATAGCTCTCAGTCTACACACACCAAAGAGAAGAGTGTCCCGTATGAGAAGACCCTCAAACATGAGGATGGCCTCAGTGGGCCTACCAAACCCCTTCCCAAGTCTGCAGATGTTGTGGTGATTGGAGGAGGAAGCCTGGGTTGCCAGACCCTCTACCACCTGTGTAAATTAGGCATGACCAATGTGGTTCTCCTGGAGAGGGACAGACTGACTGCTGGCACCACCTGGCACACAGCTGGACTTTTGTGGCAGTTAAGACCAAGTGATACTGAGGTAGAGCTGTTGGCTCACACTCGCAATGTGGTCAGCTCAGAGCTGAAGGAGGAGACGGGCCTTGAGACGGGCTGGATCCAAAATGGAGGCCTGTTCATTGCGTCCAACAAGCAGCGATTGGACGAGTACAAGCGACTCATGTCGCTGGGTAAAGTGTATGGCATTGAGTCACACGTCCTGTCGCCAGCTGAGACCAAAGACCTGTATCCTCTGATGAATGTCAAAGATCTTTATGGCACGCTCTATGTTCCTAAAGATGGCACCATGGACCCAGCGGGCACCTGCACCACCCTCTCCAGAGCAGCCACTGCACGCGGCGCCACTGTGATTGAGAACTGTCCAGTAACGGGTATCCAGGTGAAGGTTGATGATTTGGGTGTTAAGAGAGTGAAAGCGGTGCAAACTCCTCATGGCACCATCCGAACACCATGTGTGGTCAATTGTGCAGGGGTTTGGGCCACTAAACTGGGTGAGATGGCAGGTGTTAATGTGCCATTGATTGCGATGCACCATGCTTATGTCGTCACAGAGCGAATCGAAGGAATTCAGaacatGCCCAACGTCAGGGACCATGATGCATCAGTCTACCTCCGTCTTCAGGGTGATGCACTCTCCGTGGGAGGCTACGAACAGAACCCCATATTCTGGGATGATGTTTCTGATAAATTTGCCTTCAGCTTGTTTGATCTGGACTGGGatgtttttatgcagcacatTGATGGCGCCGTCAATAGAGTTCCTGCTCTGGAGCAAACTGGAATCAAATCCACTGTCTGCGGTCCagAATCCTTCACTGCAGATCACAAACCTCTTATGGGTGAAGCTCCGGAGGTGAGAGGCTTTTTCCTTGGATGTGGCTTCAACAGTGCAGGTATGATGTTAGGGGGAGGATGTGGAAAAGAGCTGGCTCACTGGATCATTCACGGCCGTCCAGAGAAAGACATGTATGGATATGATATCAGGCGCTTCCACCATTCGCTGACCAACAACAACCGTTGGATCAGAGAGAGAAGTCACGAGTCCTATGCCAAAAACTATTCAGTAGTTTTCCCGTTTGATGAGCCTTTGGCAAGCCGAAACATGAGGAAAGACCCCTTCCATCAGGTGCTACAGGAACACGGCTGTGTGTTTCAGGAGAGACATGGCTGGGAGAGACCTGGATGGTTCAACCGAGATGGAGCTGCTCCGGTTCTAGATTATGATTACTATGGTGCATATAATGTTCCCAAGAACACGGTTTACAAATACAGCAGGATACTAAGCAAAGAGTACACCTTTGACTTTCCTCCACATCATGATGTGATTCGAGATGAATGTTTAACATGTAGGAATGCTGTAGCTGTGTTTGATATGTCCTACTTCGGTAAATTTTATCTGTCTGGTCCGGATGCAAAGAAGGCTGCTGATTGGCTGTTTACAGCTGATGTCAACAAAGCTCCAGGATCCACCGTCTACACCTGCATGTTAAACCAGAGGGGCGGAGTCGAGTCTGACCTCACTGTCAGTCGTCTGGAGCCAAGCCCCTCCCACCTCCCACTGACACCCGAATTTAATGGTGATGCGTATTACCTGGCCATTGGAGGGGGTGTGGCGCAGCATAACTGGAGCCACATTCAATCTGTGCTGCAGGACCAGGGTTTCCGCTGCACACTAATAGACCACACTGAGGACATGGGCATGATCAGCATACAGGGACCCAAGAGTCGTGAGCTGCTGCAGGAGGTGCTGGATTCAGAGCTCAGCAATGAAGCATTTCCCTTCTCCACACACAGGATCGTGAGCGCCGCTGGACACCAGGTGAGAGCCATGCGTCTGTCATTTGTGGGTGAAATGGGCTGGGAGCTTCACATCCCGAAAGAGTCCTGTCTGCCTGTCTACAACGCTGTCATGGCCGCGGGAGCTAAATATGGCATCTGTAATGCCGGCTACCGGGCCATTGACTCTTTGAGCATTGAGAAAGGTTACAGGCATTGGCATGCAGATCTGCGTCCTGATGACACTCCACTTGAGGCAGGACTTGCATTCACATGTAAGCTGAAGACCTCCATTCCCTTTATGGGACGGACGGCACTGGAGGCCCAAAAGGCAGAGGGTCTGCGCAGACGCATCGTTTGTTTCACAGTTGATGAGAAAGTGCCAATGTTTGGTCTGGAAGCTATTTTCCGCAATGGTGTTCCTGTGGGCCACCTGCGGCGCTCTGAATTTGGATTTGCTATTGACAAGACCATTGGATATGGGTATATTCGCAACCCAGATGGCGGTGTGGTCAGCCCTGATTTTGTGCGCAGTGGAGATTTCACTCTGGAACGGATGGGCGTTACATACAAGGCCACAGCCCACCTGAAGTCTCCCTTCGACCCTGAAAACAAGCGCGTGAAGGGCATCTACGGCTCACCACAGGACATAGCCAGAATGTAACTGATCCAGACTGAGCTTCAGTATAACAGAGGTAAATGTTTACAGGCCTTTATTCAACACATCAGCGTCATCAGCATTCCAGGACAAAACAACAACACGCTGATCCTACTGGGTTTATATTCAGGGATCATTCATTATAATGGATCATTGATTCTATAGTAAAAAGGTCCAATCGTTTTTAACATCATCCTGTGCCTTAATGTTCAGGAGGAAATCACTCATATTTTCCAGAAAAGAGTATTTTAGACAGCAAAGTCTTAATTTCTTTTTGTACTAGCTTGAATGTCTGTGCATTAAAGATGCTTGTCAGTGATTGCATGTAAAATGAAATCTAAATAATTTAATAgttgaattaatattttacaaatttaagttaatagaattaaataagtacaaatggtTTATTTAAGAAGTGAAGGTCTGTTTTAGAAATTACAATATGAAATCTCCATGTTGAGCAATCAAATCATTCCCTCACTCATGTGCTGTGACTTGATCTGATAACTGGAATTTCTACTATTTgctcatttttattaataaaatatggttTTCTTTAGGATGTCTGCTGCTGCTTACTTCATTTGGTGTTCAAGTGGAAACTGTAAATGTGctaaatttatgaaaaataaagcgTTTGTCATATTGTAAAGTCTGTAacttctttttgttttctttttaacataGAGGTAATATTTTATACATCAAGGATATATAACGTTGACCAGAAGTGACAGTGAAGAGGTTACAAATATAGTTTATCAAATAATCCTGACCAAATTTATCCAAagcccctttaaggcaagtcatttcacttggcagccatctttgaaacacctctcgggcgtTTCTGATTTGGAAtcagcaatgaaaattaaacaacaactgtctcataagtttcatttctaaacgtctgaatcaaacaaaatctgcatattttgaGGTACCCCAAGCTATTGCGAATGAGCACTCGAAAGGAATGAGATCATTACACCAACCTTATTTTGCAGCAGTGTTACACAATATCATCCTCTGTATAATGTTCGTCAGATCGCGCTGTTCTTCTGGAGTAATCCATTACTTGTTACTGATGGCGAatttcctccagaaatgacagcgactctttgttcacaagtttgtgggtgtttgagtAGTTGCATGTGATCGGcatttgacaggatggactgtatctcgcattcatttcatacagattacaaaaccaaaaaacttgcATTTGGTTCATTTAGAGTTatagatttcaagctttatgtggatatatttttcTGTCAGTGTTCACGTGTATGAAGCAAgcattcgctgagattccagtgtgtttgttgaccaatAAACTGTCGTTAAAGCACAAATCTGGTCCCCCTTAGAAACGCCGGTTTATAGTGATGGAAGATTGGCTCCTGTACAAGTAAGCAGGTCTTATTGACCGgcacacttttccccatttaaaataatacaagtggcatgtcttgtgtattctagagtctttgatTTATTACAGTTTccagaaaaatattttaaaaagcaatcaggATTGATCATAATAAAGCAGCAAAATCagtatattaaaatgatttcagaatgatcagtggacaaatcaaaattattaacccccctgagttattagcccccctattattttttccacaatttctgtttaacggagagaagatttttttccacacatttctaagcataatgattttaataactcatttctaataatttattatttatttatttaatctttgccatgatgacagcacataatattttactagatttttttcaagacttaaagtgacatttaaaggcttaactaggttaattaggttaactaggcaggtttgggtaattaggcaagtttttgtataacgataatttgttttgtagaccaatatacagcttaaaggggctaataatttaaaaaaattaaaagcagcttttattctagcccaaataaaacaaataagactttctccagaagaaaaaatattatcagaaatactgtgaaaatgtccttgctctgttaaacatcatttttgaaatagttttaaaagaaaaaaaaatctaagttttTAATATAATGATGCTGAAAAACAAGATTTAAATCATAACAatacataacattttacaaaatacttTACAAAAGCAGTCTATagctgcgtctcatttcagaggttgCATTCTCCGAAGGATGCAGGCTTTAAAGGTGAGTCTTTCTAAGTCCTCACAGGCCAAACCAAGCGTTTTAAAATGAGACgatctagcctacagaggacagATTTCATCACCTAGCAACAGTAGcagctgctgttaataagctgtaataaaatttgtaaggactttttttttcaaattgattttaaacttgttttaagTGATCTGAAGACAAAACAAGGTATACAAAAGCTGGGAATATATTTTCTTTGATCCATACATGtgcacataaaaatgtaaactgtctataaaatcactttttagtaGACTTGTCATACGCTTTCTGTTTTTAACATAGAACTAGGAAACGAAGGATGCATTTTGAGGCTGCGTTCGAAGGagtctttacattttatttaaatgagacAGCCTTCGTCCCACCATGATGGCACAGCCCCCTTTGAATGCAtcagaggatgcagcctctgaaatgagactttaatttaattaaatatcacattattaattttttttttgcctattcTAATTATTGcaagtgtaaataaaaatatcccAAAATGCATTACACTCAAATTTCAACTGATGCATAAGAATTGTAAATAATATCAATGTTTGTATTTGTCATtggacacacacagacaaacaaaaacacattgtttcgattaaattttttttttattattaattgtattttttattagatcaCTACAGTTTAGCATTCTACTAGTTGAAATGTTTATCATGCATACATGCAAACTTCTTTGTTTGCTATCAGTTAAAACAatagtttatattttacattttattgacattataaTTTTCACCTTCACTGAAAAATAGTTTTCAAAGTTGTAAGTAAAAGCAAAGACTCACGTTtgatttgttctgttttttttttttttggtttttttttgcagtagctGCTGCTTGCtgtatttttatcatattttgcacaattaaatgataatttctaagaataaatagttttttttagtgTTCTCATGCGAATCGTAACATAGTCTTCAATAACAGTCTAAACACAAAGCAGTTATTGAGTAATTAATTGTGGAGAGTGTAATGAGCGGGCCGCTGTGTGGATCTGTTATCGAGCTTCAGATGGTAAAGGTGCAGATCAGCCGCTGCTGTCCGCTCGCACCTCTGTAGGGCTGTCATTATTAGAAGCCACTCTCCTGTTTATTTCACATGGGTATGGGGCTCTCTGAAGCTGCGCTGTCACCACCGGGATCTCCTGCTTCTCCCAGTCACCCTGTGAAAAGATGTTCTATTGTCAGGACCACTCTGAGATTGAGTAGATTGCTCATTAAAGGTTTACTTTACTGAAAGATTTACAATGACGATATTAATTAATCACCCAAAACcttcaataattaataatagtaattaatgaTAATATGGGGTAAGCTAACCCTTTACATGCAGTGTTgtacagttttgtttgttttccatcCCATTGTAATAGAGTTACTGTGGCAGGACCTTAAACTGTCCTATTGTGTTGTTACGTATATCAGCaaaatttcaaaatattattttctccCAAAAGAAAGAAGTTATTCCAGTTTAGCTTCCTGTACAAACCTACGCT

Function

GO:

id name namespace
GO:1901053 sarcosine catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008480 sarcosine dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

ZFIN:

id description
ZDB-GENE-040426-996 Predicted to enable sarcosine dehydrogenase activity. Predicted to be involved in sarcosine catabolic process. Predicted to be active in mitochondrial matrix. Is expressed in alar plate midbrain region; digestive system; myotome; nervous system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in sarcosinemia. Orthologous to human SARDH (sarcosine dehydrogenase).

Ensembl:

ensembl_id ENSDART00000189799

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005832 lncRNA upstream 90646 10288294 ~ 10295789 (+) True XLOC_001943
TCONS_00005687 lncRNA upstream 90687 10288148 ~ 10295748 (+) False XLOC_001943
TCONS_00003804 lncRNA upstream 190833 10178101 ~ 10195602 (+) False XLOC_001941
TCONS_00005686 lncRNA upstream 199177 10178168 ~ 10187258 (+) True XLOC_001941
TCONS_00005685 lncRNA upstream 490892 9890691 ~ 9895543 (+) True XLOC_001939
TCONS_00003816 lncRNA downstream 164027 10728995 ~ 10737250 (+) True XLOC_001948
TCONS_00003822 lncRNA downstream 236737 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00005833 lncRNA downstream 251946 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA downstream 251946 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003828 lncRNA downstream 415265 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00003808 mRNA upstream 6304 10351685 ~ 10380131 (+) True XLOC_001945
TCONS_00003806 mRNA upstream 60410 10313024 ~ 10326025 (+) False XLOC_001944
TCONS_00003807 mRNA upstream 60491 10313044 ~ 10325944 (+) True XLOC_001944
TCONS_00003805 mRNA upstream 112273 10210455 ~ 10274162 (+) True XLOC_001942
TCONS_00003801 mRNA upstream 575838 9697097 ~ 9810597 (+) True XLOC_001936
TCONS_00003813 mRNA downstream 71269 10636237 ~ 10700769 (+) False XLOC_001947
TCONS_00003814 mRNA downstream 112729 10677697 ~ 10700769 (+) True XLOC_001947
TCONS_00003815 mRNA downstream 163902 10728870 ~ 10737250 (+) False XLOC_001948
TCONS_00003817 mRNA downstream 173912 10738880 ~ 10782810 (+) True XLOC_001949
TCONS_00003818 mRNA downstream 223843 10788811 ~ 10796176 (+) False XLOC_001950
TCONS_00003803 other upstream 473258 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003802 other upstream 660544 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003791 other upstream 1037929 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003779 other upstream 1506309 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 1517540 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003821 other downstream 236737 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003825 other downstream 257787 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003827 other downstream 407842 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003830 other downstream 550886 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003841 other downstream 933725 11498693 ~ 11498809 (+) True XLOC_001959

Expression Profile

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