RNA id: TCONS_00003801


Basic Information

Item Value
RNA id TCONS_00003801
length 7089
RNA type mRNA
GC content 0.43
exon number 24
gene id XLOC_001936
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9697097 ~ 9810597 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attgTAGGGAACGGTAGTGAGCAGCAGTTACAGCAGGAGCTGGAAGATGTGCTGATGGACCCTTCAGTCACTGAACTGGTGGTTGGACCGGATCATTTGGGACAGGGTGACCATGGCTATCCCACTACAGCTGTGCCATCACGCTCCGGCTCTGTGCCTCCTAAACTCGAGATAGTGCTgcccattcagggagctcaggagaGTGAACTCAATGAGAGATCTTACAGggATGAGCCCTCTGACTTGAGTCCTGGTACCCCTGTCCCAGATGAGGACAGCGTGGTGTTCAGTAAACTGACGTATTTAGGTTGTGCGTCAGTGAACGCCCCACGCAGTGAGGTGGAGGCCCTGCGCATGGTCAGCATCCTCCGCAGCCAGTGCCAGATGCCCCTGGATGTCACGCTCTCTGTACCCGGAGTCTCAGAGGGCACCGTCAGACTGCTGGACCCTCAGAGCAGCACTGAGATTGCCAATTACCCCATTTACAAGATCCTCTTCTGTGTTCGTGGTCATGACGGGACGCCTGAGAGCGACTGCTTCGCATTCACTGAAAGCCATTACAACACCGAGATCTTCCGTATCCACGTCTTCCGCTGTGAGATCCAAGAGGCGgtCAGTCGAATACTCTACAGCTTTGCCACAGCATTCCGCAGATCAGCCAATAAAGCGCCACTCGCGACCAAGGCTCCGCCCCTCACACCAGACAGCGACGTCTTCACCTTTACCGTCAGCCTGGAGATCAAAGAGGATGACGGGAAGGGCACGTTCAGTGCCGTATCAAAAGACAAGGACAGACAGAGCTTCAAACTGCGGGCCGGCATGGACAAAAAAATTGTGATCTACGTCCAGCAAACGTCCAACAAAGAGCTGGCCATCGAGAGGTGTTTTGGTCTGcttttgagtccggggaagaacGTGAAGAACAGTGATATGCACCTGCTCGACCTGGAGTCAATGGGCAAAAGCTCTGATGGGAAATCTTACATCATCACAGGGAGCTGGAATCCCAACACTCCTCAGTTTCAAGCTGTGAATGAGGAGACGCCCAAAgATAAGTTCATGTACATGACAACGGCGGTTGACTTGGTGATCACTGAGGTCGAGGAGCCTGTGAGGTTCCTGCTAGAGACACGGGTTCGAGTGTGTTCACCCAACGAGAGGCTGTTCTGGCCCTTCAGCAAACGCAGTTACACAGAGACCTTCTATCTCAAACTCAGACAGATGGAGAACAAGGAGAGGAAGAGTAACTCGGATACGCTGTATGAAGTGATGAGTTTAGAGAGcgagacagaaagagaaagaagGAAGACCACAGCGAGCCCCGGCGTACTGTCTTCTGGGTCCCATGGCTCCACGGTGCCATCTCCACCTGAGGATGATGAGGAAGAAGATAACGACGAGCCATTATTAAGTGGCTCTGGAGACGTCTCTAAAGAATGTGCCGAAAAGATTCTGGAAACTTGGGGAGAACTGCTGTCGAGATGGCATCTGAACTTGGCAGTGCGTCCCAAACAGCTCCCGGCGCTGGTGCGCAGCGGTGTTCCAGAAGCCTTGAGAGGGGAGGTGTGGCAGCTACTGGCCGGATGTCATAACAATGACCATCTGGTGGAGGAGTACCGGACTCTCATCACTAAGGAATCTCCACAGGACAGTGCCATCACTCGGGACATTAACCGTACGTTTCCTGCACACGACTACTTCAAAGACACAGGGGGTGATGGGCAGGACTCTCTCTATAAGATCTGTAAGGCGTATTCTGTTTATGATGAAGAAATCGGTTACTGTCAAGGGCAGTCCTTTCTTGCTGCTGTGCTGCTATTACACATGCCAGAAGAGCAGGCGTTCAGCGTGCTGGTCAAGATCATGTTTGAATACGGTCTCAGGGAGCTCTTTAAGCAGAACTTTGAAGACCTGCACTGCAAGTTCTTCCAGCTGGAGAGACTCATGCAGGAATGCATTCCAGACCTGTACACACACTTCCTGAACTTGGGTTTGGAGGCGCACATGTACGCCTCCCAGTGGTTCCTCACACTCTTCACAGCCAAATTCCCTCTTTACATGGTCTTTCACATCATAGATCTTCTGCTGTGTGAGgGCATCAGTGTCATTTTTAATGTGGCTCTTTCATTATTGAAGACATctaaagatgatctgctgcagacGGATTTTGAGGGTGCACTGAAGTTTTTCCGAGTGCCTGTGCCCAAGCGCTATCGCTCTGAGGAAAATGCTAAGAAGCTCATGGAGTTAGCATGCAGTATGAAGaTCAGCCAGAAGAAGCTGAAGAAGTACGAGAAGGAATATCACACCATTCGCGAGCAGCAAGAACAGCAGGAGGCGCCGATCGAGAGATATGAGAGAGAAAACCGGCGGCTACAGGAAGCCAACATGCGACTGGAGCAGGAAAATGACGATTTGGCTCACGAGCTGGTCAGCAGTAAGATCGCCCTGAGGAAAGATCTGGACAACGCTGAGGAGAAAGCAGACGCGCTCAACAAAGAGCTTCTCATCACTAAACAGAAACTGGTGGAGTCGGAAGATGAGAAAAGACGACTGGAGGAAGAGTCTGCACAGCTGAAGGAGATGTGTCGGAGAGAGCTGGATAAATCTGAGTCCGAGATCAAGAAGAACGGCTCCATCATCGGCGAATACAAACAGatCTGCTCTCAGCTCAGCGAGCGACTGGAGAAACAGCAGACGGCCAACAGAGGAGAACTAGAGAAGATTCGGatGAAGGTGGAGGGCTGTGAGAAGTGCAGTAATCTCTTCAGTAAGGAGGGCCGTCTGAAGGTGCTCAGTGCTCCAAAGGAGGGCAGCGAGGAGGACACAGACGAGGAGAAGGAAGCGCTGAAGAACCAGCTGAGAGAGATGGAGCTGGAGCTCGCACAGACCAAACTACAGCTGGTGGAGGCAGAGTGCAAGATTCAGGATCTGGAGCATCATCTGGGTCTCGCTCTGAATGAAGTCCAAGCGGCCAAAAAGACGTGGTTCAACAGGACATTAAGCTCCATCAAGACTGTGACAGGAGCTCAAGGCAAAGAGAGCGTGTAACCGAACCACACACttccataaacaaacaaaacaaaacactccaGCTCCCCATCATCCCCTTCGCTGGACCAGTGCGAACAACACTTTCTCTCTCCTTTTGTATAAAACAAACTAAAGTTTAACTCTAGGGTACCAGCTACCCACCTTTGAAACACAATACTTACTAAAGACAAGACTTTAAGGCTAGTCTTTCTACTACTGATGCTAAACAAAGACGTGTAGCGACTGAGCGGGAGATTATAATTTCTATCTACTGTCCAACTCACGACTACTTGCACAAACACAGAGTCTGAGGAAACGGAAGGTACGAGTGATGCCGGGAAACTAGCGGGACTTTCGTCATTGTATAAAAGAAAGCAAATGTGTTGCATGTGTCAGACTGAGATCTGCTTTTattgtatagtgtgtgtgtgtgtgtgtgttggttctCATTGGAAGACTAAAAACAGAAATTTGACACTGTATATAAACTGTACAGTGAAGTTTTACATATTCCTCAATGAACCACTAGATGGCGCTCACCAAACGGTGTATGATGGGATAGCAGTGTAAGCGAAAGGTCATTTACAGTCGCCGTTCATCCTGAATTACAGAAAGCACTTAAGCATTGAGCACAGGCTTTAATGGGAAAGCACATCTGGAGGTAAATGAACCTGCGGCAAAcactgtgtatgtatgtatgtatgtgtgtgcgcgcgtgtatgTATGGGAAAGGTCTTTGCACCTTGCAGACATATTTATATTGATATCAGGCTTGCTGGAGTTATTGTCATTGTTAAAGATAGCCCATGTTCTCTGCAGGCCCTTCTAATAGGCACTGGGATGTACATAAAAGcatatgttttctgtttttttggaTTAATTTTATATTTCGACTATTTGGTAACTGTACTAATGTTGCCTCCTTGTACTGTGCTACCAATTAttactcatgttttttttttttttttgctttggactTCGATTTCAAACTGCTGTCTTATCATTACATGCCAAATGTACCTTTTACCCAGCATTACATGCGTGTGGACATGGTAATAGTGTAGGATGCATTGTGTAAACTTCCATGAGTTTCAGTATAAAGCTATGAACACGTGTTTCTGCTGGTCTCCAGTCTGTTCTTTATGGTTTGAGCTTTACAAATAACAGCTGTGacgttattttaagtttttacatTTGCAAAACATGCGCCATATAAACTCTTGTTATACTTGATAAGTTGTAGCGGATGAAAGATCAGCTTGACAATATTTCATTAAAAGATGTCTAAAATAGTTGTTTTTAAGATGCTCTATAAAGAAATTCTGGGTGTAAGTATGCAAAGTCGAatgaagctgtggtcacactgcactattttccccatagactttcattcatacgcacgcgaatgcgtcagactggaaatgcaGGCTTGTGCattaagtttcgcagttcgctgcgttggaaagttcaagcttggtgaactgacctgcaaaatcgcatcacatgagtgcgtgagaccaattgaagatcaaaacatgacctctcaggacaaaaatttaaaacatggaccaatcgctcgttttttttttttttttttttaaagggttaatcatcttgtttattccTGCCCCTGTTAATTTTGcgcacacaaactctagtgtgaccgcagattTTTAAGGGTTCAGTACATGAAAATGGTcatactgtgagcctcaaacACTGTTGTTTCCTGTTGTGTAAATTTGGCGACTGTACTGTAAAACCCCGGTCGTGAAATGCCAATCAGAACATAAAACAGGATTTGAATGTACTTAGACTGACATTCAAGGTCATCAAATCAGCAGTTCAAACACAGATTAATATGTTGCATACAGGATCATTAATGTGCACACCCCAGGCTATTTTGAGATTACAACAATGTTCATTTTTCTCCCTTAAATTTTAAGTTGATCAACGTTTATATTAAATCAAAGAATATagaacacaagacatgtcacttgtatggtttcaaatggggaaaaataagcaCCCTTAAAAAATGAGATGGttcatctcaaggggctatcaataaattcaaattcaatgaGGAaaggtcaatatggtgaataaagccccgcctactagtacaggagtcGATCATCAATCGTTATAGACTGACATTTCCTCTGTGGAAAAAGCTCAGTCCAGGGACCTCATGCatcaacactgcgtacgcacaaaaactttgcgtacgccagatttcttgctcacgtttggatttacgaACTAAGAAATTAATGTGAGAATGTGcattggtccacgccaacttcattgTCTGGCGTACGAGCATTtcttatgtgtgtttgttttatttccattggcgactcctagaggcaattgtgttaaactgtacactaaaaagtatctttgagctgtgcaatggcagctgtatgggacgggatcattCGCATGTTTAGCCGGTATATAAGGTTTCTATACCGTGCAGTTGacaagccaaacattaaagcgcaaaatTTGCAGTGATCACTAGTtctcccaatgtaatcggagcggtCTAcggcacgcacattgctataaaggcaccatctgaaaaTGAATTTACATACATGAATCGGAATCATTACcgttcaataaatgtgcaataaTTAGACAAAATAcccaagcatactgcctgagaggcattTTAAATGTGgccgcagagtgaaatgacttggcTTAAAAAACTTTGGTTAAAATACCATGTCTGtgtgactcttattttgaaaatgggagaTGCTGCAAAGTCAAAGCCAGACATGACATTAGCAGTGGTTACACGGGGCTGTGCAGTCATAATTCCTGACAAAGCTACAGCAGGTGACTTTGCTGAAAAATTGgtgtatattttacagtgaacTTATTTCATTACAAGAAATACCCTGCTTTAAAAATATTCTTTGGCTAATGTTAGCTAACTTAACTTGGCTCCTTTCATCTGGCCAAACAAAACAGACATAATTTAaaggtttatttagtttttttaaagaggtggtccactacaatatcatattttaaactttagttggtgtaatgtagctgtgtgaacataaaaaaaaaacatctctgaaTTTAAAAAGTTCAAAGCAAAGGGAGAACTTGCTTTTTACAgcgttagcttagcaaagccaacaataaacaaattttgcctcttgtgcagaggtgtcggcatTCAGCGAGTTTTGCAAGTTGACTAAACTAATAATTtgatatgatgatgatgttactttcactaagcatggctataaaacagaaaggagggataaagagttagggaggtaagacttcataacattaatTCTCAACCATGAGTCAGGTCTAAGATAACAGATAGttctaaaaattatatatatttttgttttctttagaattgtcataatattcatgcaaaaggtttcttaagtgatcttagcatatcaATCCAGTTGTTACTTTGTTTGAAAATTTAGGAttgatttatgttattttttttaaataataatagtatttatttgaaataaataaaaagttatatttattgaaaaataaattaacaatttaaGGGTgtggggtggttcgcccagggtgtcatttaaactagaaccgccattGTCCTCCCCGATGGTCGTTGACCCGATGGTCGTTAcctagacagcaatggcaatttaatatttaccttaaggtacatcaatagaagaagctaCATTAgtaatattgtggctcaaaaaaGGATATggataaatgttattattagagtctgtatagtgagtgtgtgaatatagTAAATAACGccttttgtttagtttgttattctatttgttttattatttaactcaatcttcattaattttagacttGGCATATACTATGTTGTACAATAATGGTGTGTGAAAAATAAcctaaaagttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaaaagtgtttttaaactaaatattgctttttatttggtttgcacatgtacttgctgaattatttcaaggaat

Function

GO: NA

KEGG:

id description
ko04131 Membrane trafficking

Ensembl:

ensembl_id ENSDART00000167821

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005830 lncRNA upstream 35201 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00005683 lncRNA upstream 35201 9649604 ~ 9661896 (+) False XLOC_001935
TCONS_00005684 lncRNA upstream 35201 9649649 ~ 9661896 (+) True XLOC_001935
TCONS_00005682 lncRNA upstream 35716 9649372 ~ 9661381 (+) False XLOC_001935
TCONS_00005829 lncRNA upstream 571234 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005831 lncRNA downstream 12600 9823197 ~ 9835446 (+) True XLOC_001938
TCONS_00005685 lncRNA downstream 80094 9890691 ~ 9895543 (+) True XLOC_001939
TCONS_00003804 lncRNA downstream 367504 10178101 ~ 10195602 (+) False XLOC_001941
TCONS_00005686 lncRNA downstream 367571 10178168 ~ 10187258 (+) True XLOC_001941
TCONS_00005687 lncRNA downstream 477551 10288148 ~ 10295748 (+) False XLOC_001943
TCONS_00003799 mRNA upstream 41277 9595575 ~ 9655820 (+) False XLOC_001935
TCONS_00003798 mRNA upstream 47362 9595575 ~ 9649735 (+) False XLOC_001935
TCONS_00003800 mRNA upstream 52378 9601587 ~ 9644719 (+) False XLOC_001935
TCONS_00003796 mRNA upstream 126085 9553935 ~ 9571012 (+) False XLOC_001934
TCONS_00003795 mRNA upstream 126390 9550419 ~ 9570707 (+) False XLOC_001934
TCONS_00003805 mRNA downstream 399858 10210455 ~ 10274162 (+) True XLOC_001942
TCONS_00003806 mRNA downstream 502427 10313024 ~ 10326025 (+) False XLOC_001944
TCONS_00003807 mRNA downstream 502447 10313044 ~ 10325944 (+) True XLOC_001944
TCONS_00003808 mRNA downstream 541088 10351685 ~ 10380131 (+) True XLOC_001945
TCONS_00003811 mRNA downstream 575838 10386435 ~ 10564968 (+) False XLOC_001946
TCONS_00003791 other upstream 348591 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003779 other upstream 816971 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 828202 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003759 other upstream 1353792 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 2119046 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003803 other downstream 102466 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003821 other downstream 991108 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003825 other downstream 1012158 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003827 other downstream 1162213 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003830 other downstream 1305257 11115854 ~ 11115970 (+) True XLOC_001954

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_05676697_05705653.mRNA True 3011 mRNA 0.47 12 CI01000304 5676633 ~ 5706860 (-)
bowfin (Amia calva) AMCG00004835 True 345 mRNA 0.49 3 CM030140.1 5154598 ~ 5158802 (-)