RNA id: TCONS_00003833


Basic Information

Item Value
RNA id TCONS_00003833
length 4043
RNA type mRNA
GC content 0.41
exon number 11
gene id XLOC_001955
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11260154 ~ 11312342 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTGCAGAACACAGGgaAGTTAGCAGGATGCACCATTTTCATCACCGGAGCAAGTCGAGGTATTGGCAAGGCCATTGCTCTGAAAGCTGCGCAGGATGGAGCCAATGTAGTCATCGCTGCCAAAACAGCTGATCCACATCCCAAACTCCCCGGCACCATCTACACAGCTGCAGCAGAGATTGAAGCAGCTGGAGGGAAAGCACTGCCGTGTATTGTGGACGTCCGTGATGAGAAGCAGATCAATGATGCTGTTGAACAGGCTGTGGAGAAGTTTGGAGGGATTGACATATTGGTCAACAATGCCAGTGCCATCAATTTAACAGGGACTCTTCAGACTCCAATGAAAAAGGCTGACCTCATGCTGGGCATCAATCTCAGGGGAACATACCTGACGTCTAAACTGTGCATTCCACATCTTCTGAAGAGCAAAAACCCTCACATACTAAACCTCAGCCCACCTCTCAACCTCAACCCCATTTGGTTCAAAAACCACACGGCTTACACCATTGCAAAGTATGGCATGTCCATGTGTGTACTGGGAATGGCAGAAGAGTTCAGAGGATCCATTGCCGTTAATGCCTTATGGCCAAAGACAGCCATTCAGACGGCTGCCATGGACATGTTGGGCGGTTCTGAGGTTGGCAAGCAGTGCAGGAAGGTGGAGATCATGGCTGATGCAGCATACGCCATCTTCAAACAACCCACCAGCTTCACCGGACAGTTTGTTATTGATGAGGACATTCTCAAAAAGGAGGGCATTAAAGATTTTGATGTTTATGCTGTTGAGCCAGgtcaTCCATTGCTTCCTGACTTTTTCTTGGACGGCCAGCCTGAGGATCTAGTCAAGCATATGGAGGCACATGGTGCCACTCCGGCGTTCACAACTGCAAAAGCAGATCCCGTTGCCGCAGGACCAGTTTCTGAGATGTTCAATACAATCAGAGGAATTATCAGTCCAGAGATGGTGAAAACCACACAAGGAGTGTACAAATTTAACTTGGCAGGCGAGCATGCTGGAGTCTGGTATCTTGACCTGAAGAACGATGCTGGAAGTGCTGGAAATGGGGAACCTCCTGTCAAAGCTGATGTTGTCATGTCGATGGACAGTGAGGATTTTGTCAAGATGTTTGGAGGGAAATTAAAGCCAACCATGGCCTTCATGTCTGGAAAGCTGACTATTAAGGGTGACATGGGCCTTGCCATCAAACTGGAGAAGATGATGGCCATGATGAAGTCTAAACTGTGAACACATCACGCAGTCTCCTGCCTTACAAGATGTACATGATGACCTCTTTTCTATATCAGTGTtttttgattaaactaattgTTCAGATTGTACTAATTTTAATAAAGAACTATCAGGTAGTTATAGTTTCTTTACTTAATGCAAGTAGCATAGAGTTCATTATTGGCTGCCCACTTTTACTGCAGCACTGGCCCTGAAAGTGATTGAAAGTTAAAGTGAAATGTATTGTTCCCTTTGGAATTTCAAAGAAATCTTTGTTAAAACAAGATAAACCGAACCTCAATGAGGAGGTTTGATTTTAAGTTGGGaaaataccacacacacacacaaaaaaaacaaatgcacatatataaataatgattCATGGTGCTTCTTTGGAGTGGGCAGAGACAAAGTTTTTGTTTTGCATAGCTAACTCACTGCATCTGTGGTTAAATTTCCTGCAGATATTTCACtattaaatgctttaaatatgtTGAACTAGTGAACAGAGGACCAAATGTCAACCTCGGAGCTAAACCCATAATTAACCTTTTAACCAAACTAATCTAGGAATTCATTCAAGCCAAACTTTTAGAATCTGTTTGTCATTTCCTTTTGGATAACAGAGAGGCTTTAACttcttagaccaggggtgtccaaactcggtcctggagggccagtgtcctgtaaagtttagctccaaccctaatcaaacacacctgaaccagctaatcaagctcttactaatcaaggtgttcaagtaGTAtttagctgcggtcacactagatttttctcctcatagactttcattcatatgcacgcaaatgcatcagaccggaaacacaagctGTTGCAACAAGTTtagcagttcgctgcattggaaggttcaagcttggtgaacgcTGACCTATGAAATCGCATCACATAATTGTGTGAGACtaattgaagatcaaaacatgacctctctggacagaaatttaaaatatggatcatgttgcagtcacactagagttttgCATGCAATATTCTGTTGTACAGTGCtgggaaaaggggcgggattTTACAGGATGATAAGCGactgctccatgttttaaatttctgttcagagaggttTTGCTTTTCAGTTGGTCTCATGAAATCATGtaatgcgattttgcaggttagagttcaccaagcttgaactttccaatgcagtgaactgcaaaaACTTGCCGCACAAGCTTGTGTTTCTGGTCTGAGGTATTCGCGTGCATATAAATGGAAATCTATAAGGGAAaagaagtgcagtgtgactggggCTTTAATCACTTTTTTATATGTCTAATATCacaatcacactagagtttaagcttgtaaaattctgtcgtacggcaatgcgaaaaggggtgggattaaacaagatgattagacatttaaaataagcaagcgattggtctatatttaaaattcctgtccagagaggtcatgttttgatcctcgattggtctcatgcagttaagtgatgcgattttgaaggtcagagttcaccaagctttaaCTTTGCGAggcagtgaactgcaaaacttgatgcacgatcttgcgtttccagtctgacgcattcgtgtgtgTATAAAaggaagtctatgggaagaaaagtgCAGTGCTTGATCATCtagtttaatcctgcccctttatGCAGcatcgtacaacagaatttcgcatgttCAAATTCtactgtgaccgcagctttaaacaCCTTGATTTGTTGGATCAGATGTATTTGATTAGAAATCAAGCTAaagtgtgcagagctgcggccctacaggaattgagtttgaattCCCTCTAGCAATTGAGTTTTTCCTGCCAGGTGTGTCAAAcaagttaaagctaaactcatcaggacaccgtccctccaggaccgagtttagacacccctgttttagactAAAGTTAAATTTGCATCTCAAGTTTTGTATTCTGCTTTTAATACTACTAAAAGCAGGAAAAAGTTTCCATAAGCATATCATATTAACGTTAGAATAACAAATTATGCTCATGTTATTCTTGGAAAAGGGTTTTATGATGCTACTTTTCTTTGACTAATCTTCACGTGAAACTAATTCTAGTCAGAAGAAGAGACTAACAATCTGAAATATTCTGATTTATAACAATTAGcatacaatgaaaaataaaatgtattttgccTGACTTTTTCCTAACCCAAACGTTATCAAATAATTAATGCTGTTTCGtttttcattaaacatttttgaaattaatataaaacctGAAAGTTTTGTTTAATTACTTTAAACACGTGTTGCACATGAGCTGTTTTTTACACGTCGATTTAACCATCACTTACACATTCATATACGGTTTTTTTCGCATtaaatttatcattattttaagaGACATACTACGACGCCAACACTGTCTTATCATATATCTCGGACACGTACTTCCGGTGTTAGCGGAAGCACCCGCTTCACGTCCATTAAAAGCTAAATTGATGGCTTTTCTATAAAATACTGTCAAATATTGAAAAACCGCGGATAAATGACAGTTTTCCAGTGACAAATGATGTTTGGTATCGAACAAAAAGGCGGCGAGCAGCAGACGTGAGCGGACATTGGAGCTGAATCTCCCGAATGAAGGTATGATGCTTTTTTCCGGGCTCTTTGTGTTTATGCAGATGATCAGACTCACGAGCTCCGTGTCAAAACCCAATCAGCTGTCAACATTTCTGGACAGTTTTGTGTGCTTTTGAAATCTAATATCGTTAATGTGACCACGAAAAGCAAAACTTGTCTGTTTATGCAAATCGCTCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-1066 Predicted to enable oxidoreductase activity. Predicted to be located in peroxisome. Predicted to be active in mitochondrion. Orthologous to human HSDL2 (hydroxysteroid dehydrogenase like 2).

Ensembl:

ensembl_id ENSDART00000038888

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005834 lncRNA upstream 3501 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00003828 lncRNA upstream 278085 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005833 lncRNA upstream 441939 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA upstream 441939 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003822 lncRNA upstream 447757 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00005688 lncRNA downstream 230147 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 369355 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 369510 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005690 lncRNA downstream 642834 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA downstream 642834 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00003829 mRNA upstream 171260 11038192 ~ 11094127 (+) True XLOC_001953
TCONS_00003826 mRNA upstream 266888 10972795 ~ 10998499 (+) False XLOC_001952
TCONS_00003823 mRNA upstream 441101 10801719 ~ 10824286 (+) False XLOC_001951
TCONS_00003820 mRNA upstream 441515 10801564 ~ 10823872 (+) False XLOC_001951
TCONS_00003819 mRNA upstream 468451 10788811 ~ 10796936 (+) True XLOC_001950
TCONS_00003835 mRNA downstream 3502 11286741 ~ 11312342 (+) False XLOC_001955
TCONS_00003836 mRNA downstream 3686 11286925 ~ 11298603 (+) True XLOC_001955
TCONS_00003837 mRNA downstream 26575 11309814 ~ 11310769 (+) True XLOC_001956
TCONS_00003838 mRNA downstream 72602 11355841 ~ 11372541 (+) False XLOC_001957
TCONS_00003839 mRNA downstream 72645 11355884 ~ 11368476 (+) True XLOC_001957
TCONS_00003830 other upstream 149417 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 278085 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003825 other upstream 441939 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003821 other upstream 462031 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003803 other upstream 1352210 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003841 other downstream 215454 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003843 other downstream 491166 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003844 other downstream 1050014 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003853 other downstream 2573553 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 2647609 13930848 ~ 13931718 (+) True XLOC_001973

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04935603_04968053.mRNA True 1598 mRNA 0.45 10 CI01000304 4935502 ~ 4968302 (-)