RNA id: TCONS_00003836


Basic Information

Item Value
RNA id TCONS_00003836
length 797
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_001955
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11260154 ~ 11312342 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCAGATCGATTCctcggaaaaaaaaacaaaggcgaTTCCAATCAGATCCACGACTCCTGCGATATTTCCAACTGCAGTGAACCTTCAGAAATGGACGATAATGGCGAGGAGTATAACAACAACTTGTACGACATAGTCTGTGAATCATCAGCAACTGATGAAGATGGTGATTCTGACTTCAATCACACGCCAAACATCTCGCACAGGAAAAGACATGGAAAAGGGACGGGACATGAAGACAGTATTGACCCCTCCTTGAAGAAAATCAAACAAGAAAGAGGCGAAGATTACTACAGTTTGGCCAATCCACAGATTCCCAGCAGTTCAGAGATAAACCGCTCTACCGAGTTGCCCAAACCGAACCTCCAGAGCACACCTTTGATGTCCCAGAAACCTTCTTCCATAGATGGAGACTCAATGGGGGTGTCGTCATCTCCCTTGGACAGTTCTCCTACTTCCATGATCAAGCCACTGCGTGCACCTTTCCATGTTACCCAAAATAAAGTGCACATGAACTCTAATCCAGCGTGCAGTCAGAGTATGCCCACTTTACCTCATCCTGGACGGATTGACGCTATGGGTGTCCTGCACAGAGATGAATATCCCAGACCGTCTTTGTCTTACGGAGAGGCTTCGATTGGCGCAAACCCAGAAATGGATCTTCTATCTGCACAGGCACTTAGTACAGAAGCGAGAGCAGACAACACAGGTTCAAATGAGAAGATGGATTACGCTGTGATTTTGAAAGCCCTCCAtgACCATCTGATTCCTGCAGCGCATAGTTCAGAAGAGCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000143615

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005834 lncRNA upstream 25039 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00003828 lncRNA upstream 299623 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005833 lncRNA upstream 463477 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA upstream 463477 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003822 lncRNA upstream 469295 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00005688 lncRNA downstream 214783 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 353991 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 354146 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005690 lncRNA downstream 627470 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA downstream 627470 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00003833 mRNA upstream 3686 11265387 ~ 11283239 (+) False XLOC_001955
TCONS_00003831 mRNA upstream 6342 11260170 ~ 11280583 (+) False XLOC_001955
TCONS_00003832 mRNA upstream 10102 11261576 ~ 11276823 (+) False XLOC_001955
TCONS_00003829 mRNA upstream 192798 11038192 ~ 11094127 (+) True XLOC_001953
TCONS_00003826 mRNA upstream 288426 10972795 ~ 10998499 (+) False XLOC_001952
TCONS_00003837 mRNA downstream 11211 11309814 ~ 11310769 (+) True XLOC_001956
TCONS_00003838 mRNA downstream 57238 11355841 ~ 11372541 (+) False XLOC_001957
TCONS_00003839 mRNA downstream 57281 11355884 ~ 11368476 (+) True XLOC_001957
TCONS_00003840 mRNA downstream 99508 11398111 ~ 11501424 (+) True XLOC_001958
TCONS_00003842 mRNA downstream 469188 11767791 ~ 11788565 (+) True XLOC_001962
TCONS_00003830 other upstream 170955 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 299623 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003825 other upstream 463477 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003821 other upstream 483569 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003803 other upstream 1373748 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003841 other downstream 200090 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003843 other downstream 475802 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003844 other downstream 1034650 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003853 other downstream 2558189 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 2632245 13930848 ~ 13931718 (+) True XLOC_001973

Expression Profile

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