RNA id: TCONS_00003840


Basic Information

Item Value
RNA id TCONS_00003840
length 1874
RNA type mRNA
GC content 0.44
exon number 14
gene id XLOC_001958
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11398111 ~ 11501424 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATGAACGAAACTCTGCGGCGGCGTGACATGAAGCGCTTGTAAACAGAACATACTCTGGTACTTTATATCGGCTAGACGTGCTTCTTATGTTTTTGTAACATCTGCGCATATTCTGTACATTCTCTGTCATCAATGAAACCGTGGTGAGGGAAGTATACTCCAATAATACGCACTAAAGATGAGCAACATATATATTCAAGAGCCACCAACTAATGGAAAGGTCTTGCTGAAGACCTCTGCAGGTGACATAGACATAGAGCTCTGGTCTAAGGAAACTCCCAAAGCATGTAGAAACTTTGTTCAGCTGTGTATGGAAGGTTACTATGATGGCACAATCTTCCATCGTATGGTGCCAGAGTTCATAGTTCAAGGAGGAGATCCGACAGGCACTGGAACTGGTGGGGAGTCTATCTACGGCCGGCCTTTTAagGATGAATTTCACTCCAGATTACGATTCAATCGGAGGGGTTTGGTTGCTATGGCAAACGCAGGACCTCATGATAATGGGAGCCAGTTCTTTTTTACTCTTGGACGAGCAGATGAACTCAATAACAAACACACCATTTTTGGAAagGTCACTGGAGATACAGTGTATAACATGCTCAGGTTGGCAGATGTTGCGTGTGATGGTGATGAGCGACCTCTTAACCCACATAAAATTCGATCCACAGAGGTCTTGCATTCTCCTTTTGATGACATCATTCCACGTGAGATTAAAGGCAAAAAAGAGAAGAACAAAGATGAAGCGAAGAAGTCACAGTCTAAAGCAACCAAGAATTTCAGCTTGTTGTCATTTGGAGAGGAGGCCGAGGAGGATGAGGAGATGGTCAATCAAGTCAGCCAGACCATGAAAGGGAAAAGCAAAAGCAGTCATGACCTGCTGAAAGACGATCCCAAGTTAAGCTCAGTTCCAGTTGTTGACAGgaaCCAAGGGCAAGGTGATTTTGAGGATtcagatgatgatgaagatgatgcgGAGGATGACAGTGATCGTGAAGCAGAGAAAGCGAAGGTCAGAGAGAACATCGCAAAGAAGCTGAAGAAAGACAAGACGGATGAGGAGAAGTCCAGTCAAGACTTGGTGAAAAAGACCTCGCGCAGTGATGAATTGCGAAAAGAAGCTCGCCAGCTGAAGAAAGAATTACTTGCAATCAAACAGCGAAAAGAAGACGGTGTGAAGAAAGAAGAGGACGTCAGCGAGGTAGGTGACAGTAAGCAGAACAGTGAGGCGGTGACGGAGTATCTAGAGAGCAGGAAGAAGTACGACGACATGAGGAAGCAGAAATTAAAGAAGGGCTCTGGACGAGAAGCTCAGACACTTGCCCTTCTAGAAAGCTTCAAATCCAAACTATCATCTGCAATATCGGAGACTCCTAGTGCCCCAGAGGAAGATGTGGAGGAACTAGCCGAGGATGACGATAAGGGCTGGATGGCCCACGTTCTGCACTTTGATGAACAAAGCAGAAAGGTAAAAGATGCCAACATGCAGGATGAAGACACGTTCGAGATCTATGATCCACGCAACCCCGTCAACAAGAGGAGACGAGAGGAGAGCAAAAAACTCCTGAAAGACAAGAAGGCCAGGAGGTGAGACTGCAGATACAGTTCCTGCCTGTCTCCAGAAGAATCCAATTGACCTGTGCTTAAATGAGAGATCATACACACAATTCTTACATTAAAGACTCATTTCCATTTGGTATGATACTTAGAGATACTTGTAAAAGTTGCAACCATTTAGTGTTTTTCATAATACAGACAACAATCTTCTTTTACTCTTTGGTGTCATTATCAAAAATGTTCttacactgtaaacaaacaggCTCTCAAATTGTGTGTATTTACAACATAGTAATAAAAGTCCTTATTTCTAAA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005634 nucleus cellular_component
GO:0071005 U2-type precatalytic spliceosome cellular_component
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1118 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Predicted to act upstream of or within protein folding. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome. Orthologous to human CWC27 (CWC27 spliceosome associated cyclophilin).

Ensembl:

ensembl_id ENSDART00000064210

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005834 lncRNA upstream 136225 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00003828 lncRNA upstream 410809 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005833 lncRNA upstream 574663 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003824 lncRNA upstream 574663 10816914 ~ 10823448 (+) False XLOC_001951
TCONS_00003822 lncRNA upstream 580481 10801705 ~ 10817630 (+) False XLOC_001951
TCONS_00005688 lncRNA downstream 11962 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005835 lncRNA downstream 151170 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA downstream 151325 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005690 lncRNA downstream 424649 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA downstream 424649 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00003838 mRNA upstream 25570 11355841 ~ 11372541 (+) False XLOC_001957
TCONS_00003839 mRNA upstream 29635 11355884 ~ 11368476 (+) True XLOC_001957
TCONS_00003834 mRNA upstream 85769 11282883 ~ 11312342 (+) False XLOC_001955
TCONS_00003835 mRNA upstream 85769 11286741 ~ 11312342 (+) False XLOC_001955
TCONS_00003837 mRNA upstream 87342 11309814 ~ 11310769 (+) True XLOC_001956
TCONS_00003842 mRNA downstream 266367 11767791 ~ 11788565 (+) True XLOC_001962
TCONS_00003845 mRNA downstream 1015635 12517059 ~ 12730451 (+) True XLOC_001967
TCONS_00003846 mRNA downstream 1498946 13000370 ~ 13063743 (+) False XLOC_001968
TCONS_00003847 mRNA downstream 1499245 13000669 ~ 13038542 (+) False XLOC_001968
TCONS_00003848 mRNA downstream 1499280 13000704 ~ 13064110 (+) True XLOC_001968
TCONS_00003830 other upstream 282141 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 410809 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003825 other upstream 574663 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003821 other upstream 594755 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003803 other upstream 1484934 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003843 other downstream 272981 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003844 other downstream 831829 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003853 other downstream 2355368 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 2429424 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003873 other downstream 3753758 15255182 ~ 15287900 (+) False XLOC_001989

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04809176_04857217.mRNA True 1422 mRNA 0.46 13 CI01000304 4809176 ~ 4857217 (-)