RNA id: TCONS_00003842


Basic Information

Item Value
RNA id TCONS_00003842
length 1944
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_001962
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11767791 ~ 11788565 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaacttttatttgaaaaTGGCGACCGACGTGAGCAGTGATGGTTCTGAGAATAAACGAAAACTGGAAGAAGATGAAGACGAAGACAATTGGGTTGGTCCTATGCCGAGTGAGGCCACacaaaccaaaaagaaaaaagTTCTTGAGTTTGAGAGATTGTACCTGGATAATTTACCATCTGCCTCCATGTATGAAAGAAGTTACATGCACAGAGATGTTATAACACACATTGTTTGCTCCAAAACTGATTTTATCCTCACAGCAAGTCAAGATGGACATGTCAAATTCTGGAAGAAGAAAGAGGATGAAGGAGTGGAGTTTGTCAAGCACTTCCGCAGCCACTTGGGAGTGATTGAGTGCATTTCCGTGAGTGCGGAGGGAGCACTTTTATGCTCTGTTGGTGATGATCAAGCGATGAAAGTTTTTGATGTAGTCAACTTTGACATGATCAACATGCTCAAACTTGGCTTCCATCCAGGCCAGTGTGAGTGGATTTATAATCCAGGAGACGCCATTTCAACAATCGCCTGCTCTGAGAAATCCACTGGAAAGATTTTTGTGTATGATGGACGTGGCAGTAATCAGCCCCTGCACGTATTCGAAAAGATGCACACCACACCACTCTCTCAGATCCGCCTCAATCCCAAATATCGTGTCATCGTATCTGCCGATAAAGCGGGAATGCTAGAATACTGGACGGGGCTCCCGAGCGAATTCAAATTTCCGCGGCAGGTGGACTGGGAGTTTAAGACCGACACAGACTTGTATGAGTTTGCCAAATGTGGAACGTATCCCACCAGCCTGGCTTTCTCTCAAGATGGCAAGAAAATGGCCACCATTGCCGTTGACCGCAAAGTGAGGATTTTCCGCTTTCTCACTGGGAAGTTGATGCGGGTGTTTGACGAATCACTAACAATGTTTACAGAGCTCCAGCAGATGAGACAGCAGTTGCCTGATATGGAGTTTGGTCGCAGAATGGCAGTGGAGAGAGAGCTGGAGAAGGTGGACGGCATACGATTGACCAACATCATCTTTGATGAGACTGGACACTTTGTGCTTTACGGCACCATGCTAGGCATTAAAGTCATCAACGTAGAGACTAACAGGTGTGTGCGCATACTGGGCAAGCAGGAGAACATCCGTGTGGTGCAGTTGAGTCTGTTTCAGGGAGTCGCAAAGGCCATGCAAGCGGCACCAACAATTGAGATGAAAGCCTCTGAAAACCCAGCACTCCAGAGCTCTGACCCAGACCCCACCATCTTCTGCACTGCCTTTAAGAAGAACCGCTTTTACATGTTTACAAAAAGAGAGCCCGAGGACACAAAGAGTGCTGATTCTGACCGTGATATTTTCAACGAGAAGCCGTCTAAAGAGGAAGTGATGGCAGCCACACAGGCGGAAGGACCAAAAAGAGTGTCAGACAGTGCCATCATTCACACCACTATGGGTGACATTCACATCAAACTCTTTCCTGTcgaATGCCCCAAAACTGTGGAGAACTTCTGTGTTCACAGCAGGAACGGTTATTACAACGGCCACATTTTTCACCGAGTCATCAAGGGTTTCATGATCCAGACTGGAGACCCCACAGGGACTGGCATGGGTGGGGAAAGCATCTGGGGTGGAGAGTTTGAGGATGAGTTTCATTCCACTCTGAGACATGACAGACCCTACACCCTCAGCATGGCCAATGCAGGACCAGGAACCAACGGCTCACAGTTCTTCATCACTGTCGTCCCAACCCCCTGGCTGGACAATAAGCACACAGTGTTTGGAAGGACCTCTAAAGGGATGGAGGTGGTCCAGAGGATCTCCAACATAAAAGTCAACCCCAAAACCGACAAACCATATGAAGACATCAGCATCATTAATATCACTGTCAAATAGACGTGCAGCCcgatttttgtaaaaataaagcaccttttataaaaaaaaaacaaaaaaaa

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
ko03041 Spliceosome
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-070615-16 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Orthologous to human PPWD1 (peptidylprolyl isomerase domain and WD repeat containing 1).

Ensembl:

ensembl_id ENSDART00000092047

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005835 lncRNA upstream 101828 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005836 lncRNA upstream 101828 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005688 lncRNA upstream 249052 11513386 ~ 11518739 (+) True XLOC_001960
TCONS_00005834 lncRNA upstream 505905 11260154 ~ 11261886 (+) False XLOC_001955
TCONS_00003828 lncRNA upstream 780489 10980233 ~ 10987302 (+) True XLOC_001952
TCONS_00005690 lncRNA downstream 137508 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA downstream 137508 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00005692 lncRNA downstream 139524 11928089 ~ 11929132 (+) False XLOC_001965
TCONS_00005691 lncRNA downstream 139524 11928089 ~ 11929132 (+) True XLOC_001965
TCONS_00005837 lncRNA downstream 1510159 13298724 ~ 13304277 (+) False XLOC_001971
TCONS_00003840 mRNA upstream 266367 11398111 ~ 11501424 (+) True XLOC_001958
TCONS_00003838 mRNA upstream 395250 11355841 ~ 11372541 (+) False XLOC_001957
TCONS_00003839 mRNA upstream 399315 11355884 ~ 11368476 (+) True XLOC_001957
TCONS_00003834 mRNA upstream 455449 11282883 ~ 11312342 (+) False XLOC_001955
TCONS_00003845 mRNA downstream 728494 12517059 ~ 12730451 (+) True XLOC_001967
TCONS_00003846 mRNA downstream 1211805 13000370 ~ 13063743 (+) False XLOC_001968
TCONS_00003847 mRNA downstream 1212104 13000669 ~ 13038542 (+) False XLOC_001968
TCONS_00003848 mRNA downstream 1212139 13000704 ~ 13064110 (+) True XLOC_001968
TCONS_00003849 mRNA downstream 1421015 13209580 ~ 13236012 (+) False XLOC_001969
TCONS_00003841 other upstream 268982 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003830 other upstream 651821 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 780489 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003825 other upstream 944343 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003821 other upstream 964435 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003844 other downstream 544688 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003853 other downstream 2068227 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 2142283 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003873 other downstream 3466617 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003878 other downstream 3510225 15298790 ~ 15304367 (+) True XLOC_001989

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04661808_04672936.mRNA False 1305 mRNA 0.48 9 CI01000304 4661766 ~ 4672936 (-)