Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003878 |
| length | 752 |
| RNA type | processed_transcript |
| GC content | 0.47 |
| exon number | 5 |
| gene id | XLOC_001989 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 15255012 ~ 15305767 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0030229 | very-low-density lipoprotein particle receptor activity | molecular_function |
| id | description |
|---|---|
| ko05017 | Spinocerebellar ataxia |
| ko05417 | Lipid and atherosclerosis |
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-040426-803 | Predicted to enable calcium ion binding activity and very-low-density lipoprotein particle receptor activity. Predicted to act upstream of or within cholesterol metabolic process; endocytosis; and lipid transport. Predicted to be located in clathrin-coated pit. Predicted to be integral component of membrane. Predicted to be part of very-low-density lipoprotein particle. Is expressed in several structures, including axis; brain; pronephric duct; retinal ganglion cell layer; and spinal cord interneuron. Human ortholog(s) of this gene implicated in Alzheimer's disease; cerebellar ataxia, mental retardation and dysequlibrium syndrome; and dementia. Orthologous to human VLDLR (very low density lipoprotein receptor). |
| ensembl_id | ENSDART00000147877 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005694 | lncRNA | upstream | 202528 | 15096017 ~ 15096262 (+) | True | XLOC_001985 |
| TCONS_00005693 | lncRNA | upstream | 210264 | 15087993 ~ 15088526 (+) | True | XLOC_001983 |
| TCONS_00005843 | lncRNA | upstream | 250008 | 15047006 ~ 15048782 (+) | True | XLOC_001981 |
| TCONS_00005842 | lncRNA | upstream | 256042 | 15036271 ~ 15042748 (+) | True | XLOC_001980 |
| TCONS_00005841 | lncRNA | upstream | 267350 | 15025029 ~ 15031440 (+) | True | XLOC_001979 |
| TCONS_00003891 | lncRNA | downstream | 227949 | 15532316 ~ 15533217 (+) | True | XLOC_001993 |
| TCONS_00005695 | lncRNA | downstream | 377798 | 15682165 ~ 15682471 (+) | True | XLOC_001995 |
| TCONS_00003897 | lncRNA | downstream | 498574 | 15802941 ~ 15813087 (+) | True | XLOC_001996 |
| TCONS_00005844 | lncRNA | downstream | 632939 | 15937306 ~ 15953470 (+) | False | XLOC_001997 |
| TCONS_00005845 | lncRNA | downstream | 633137 | 15937504 ~ 15953470 (+) | False | XLOC_001997 |
| TCONS_00003871 | mRNA | upstream | 57567 | 15224660 ~ 15241223 (+) | True | XLOC_001988 |
| TCONS_00003870 | mRNA | upstream | 108383 | 15187316 ~ 15190407 (+) | True | XLOC_001987 |
| TCONS_00003869 | mRNA | upstream | 187456 | 15107886 ~ 15111334 (+) | False | XLOC_001986 |
| TCONS_00003868 | mRNA | upstream | 187456 | 15107886 ~ 15111334 (+) | True | XLOC_001986 |
| TCONS_00003867 | mRNA | upstream | 187918 | 15106808 ~ 15110872 (+) | False | XLOC_001986 |
| TCONS_00003879 | mRNA | downstream | 6444 | 15310811 ~ 15314151 (+) | True | XLOC_001990 |
| TCONS_00003880 | mRNA | downstream | 36401 | 15340768 ~ 15381885 (+) | False | XLOC_001991 |
| TCONS_00003881 | mRNA | downstream | 36402 | 15340769 ~ 15382125 (+) | True | XLOC_001991 |
| TCONS_00003883 | mRNA | downstream | 104134 | 15408501 ~ 15451217 (+) | False | XLOC_001992 |
| TCONS_00003882 | mRNA | downstream | 104134 | 15408501 ~ 15451217 (+) | False | XLOC_001992 |
| TCONS_00003873 | other | upstream | 10890 | 15255182 ~ 15287900 (+) | False | XLOC_001989 |
| TCONS_00003854 | other | upstream | 1367072 | 13930848 ~ 13931718 (+) | True | XLOC_001973 |
| TCONS_00003853 | other | upstream | 1403934 | 13856792 ~ 13894856 (+) | True | XLOC_001972 |
| TCONS_00003844 | other | upstream | 2965421 | 12333253 ~ 12333369 (+) | True | XLOC_001966 |
| TCONS_00003843 | other | upstream | 3524271 | 11774405 ~ 11774519 (+) | True | XLOC_001963 |
| TCONS_00003893 | other | downstream | 298717 | 15603084 ~ 15605143 (+) | False | XLOC_001994 |
| TCONS_00003898 | other | downstream | 650212 | 15954579 ~ 15954659 (+) | True | XLOC_001998 |
| TCONS_00003899 | other | downstream | 650360 | 15954727 ~ 15954815 (+) | True | XLOC_001999 |
| TCONS_00003900 | other | downstream | 656468 | 15960835 ~ 15960914 (+) | True | XLOC_002000 |
| TCONS_00003910 | other | downstream | 732540 | 16036907 ~ 16040208 (+) | True | XLOC_002003 |
