XLOC_001990 (kcnv2a)


Basic Information

Item Value
gene id XLOC_001990
gene name kcnv2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15310811 ~ 15314151 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003879
ATGCTCAAGCTTAAGGGCAGAAGGCAAAGCCTTTTTCCCAACTATAAACTTGGGGTCACAGTCCCTGCTCCCAAAGATCCAGAGGACTCTGACCTTCCTTTTGGTCAGCACAATTGGGTTAAACCATGGAATTCGATGCAGGAGTTAAGTAAGGATATTTACGACATCTATGCAGAGTACGAAGATGATGAAGAGGATCGACTGTTCTCCACTCCTAGTAAACTGTCCTCTCCGGTTAAGAACTATATGCTCAACATCAACGTAGGAGGCAAGGTCTATCAGATCTCTTACAGGGTAGCAGCAAAGTATCCCAAGACCAGAATTGGCCGTCTTGCAACATATACGGACCACAACAGGAAACTTGACCTCTGTGATGATTACACCGTCCACAACAATGAGTTTTTCTTCGATAGGGACCCAGACGTCTTCCACAACATCTTTAACTTCTACAGGACTGGAGTTCTGTGGATAAAAGATGAACTGTGTCCACGCAATTTTTTGGAGGAGATCAACTATTGGGGTGTTCGTATCAAGAACACCCATCGCTGCTGTCGAATTTCATTTGAGGAACGGCAGGATGAGCTCAACGAACAGCTGAAGGTGCAGAGGGAACTTGAAGCAGAGGTGGAAACTGAGGAACATGAGGACTTGTTTCAGGACATGGCCTTTGGGCATACGCGTTTCCTCATTTGGAACATGATGGAGAAGCCCTTCTCGTCGATCATAGCCAAAATCATGGCAGTAGCTTCCAGTTTCTTCGTGCTGGTATCACTTGTGGCAATGACGCTCAACACGGTAGAGGAAATGCAATACATAACAACCAATGGACAACTAAGTGGAAAGACCTACTGTGAGTATGTCGAGACTTTCTGTATTGCATTTTTCACCATGGAATACCTGCTCCGGCTTGTGTCCACGCCAGACCTCACACGCTTTGGGAGAAGTGTGTTGAATGCTGTGGACCTGATTGCAATTCTTCCATTGTACCTTCAAATGGTTCTAGAGTCTTTTGAGAGTCATGACTACTGGAAACATGGTAGTGATATTGAGACAGTAGGACGGGTCGGTAAATTGGGCCAAGTTCTCAGAATCATGCGTCTGATGAGGATATTTCGTATCCTTAAATTAGCACGCCACTCTACTGGACTTCGAGCATTCGGCTTCACGCTTCGGCAATGTTACCAACAAGTGGGCTGTCTGTTCCTCTTCATTGCAATGGGAATCTTAACATTTTCGGCCATGGTGTATACCGTCGAGCATGATGTGCATAAAACAAACTTCACCAGCATTCCACATGCATGGTGGTGGGCAGCTGTGAGCATCTCTACAGTGGGCTATGGAGACATGTTTCCAGAGACCCATCTGGGCAGGATTTTTGCATTTGCATGCATCTCGTTTGGAATTATTCTCAACGGCATGCCGATCTCCATTCTGTTCAATAAATTCTCAGACTACTATTCAAAACTGAAAGCCTATGAATACACCTCCTCTATAAAGAATCGTGGGAAAGTGAGGTTTGTAAAAAGGGCTGCCAAGAGGTTTGCAGAATGTTTTTAGAACGCCATGAGCTGACCTACTCCATCCTCCTACAGGCTGATTTTTAATTCATGGACACGGCGGCCTGCCTTTCCAAAAATTTGCACCAAACAGACCGCCTTAGTATAACTGTCCTCACACAGACTAGTCATTGCTGTTTGTATAAAAACTCTGTCTCTTGTACTGCTGggataaaattatatttaggAACTTttgtattacttatttttttaggcAACTCTACCAGTGATGGATGCAGTTATTAAAAACTCCTCTTGGAATACA

Function

symbol description
kcnv2a Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Is expressed in eye. Orthologous to human KCNV2 (potassium voltage-gated channel modifier subfamily V member 2).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-27 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Is expressed in eye. Orthologous to human KCNV2 (potassium voltage-gated channel modifier subfamily V member 2).

Ensembl:

ensembl_id ENSDARG00000076644

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003879 True 1821 mRNA 0.44 2 15310811 15314151

Neighbor

gene id symbol gene type direction distance location
XLOC_001989 vldlr coding upstream 5044 15255012 ~ 15305767 (+)
XLOC_001988 sh3bp2 coding upstream 69588 15224660 ~ 15241223 (+)
XLOC_001987 CR925756.1 coding upstream 120404 15187316 ~ 15190407 (+)
XLOC_001986 scpp8 coding upstream 199477 15106808 ~ 15111334 (+)
XLOC_001985 NA coding upstream 214549 15096017 ~ 15096262 (+)
XLOC_001991 trappc13 coding downstream 26617 15340768 ~ 15382125 (+)
XLOC_001992 nln coding downstream 94350 15408501 ~ 15451217 (+)
XLOC_001993 erbin coding downstream 140594 15454745 ~ 15599149 (+)
XLOC_001994 zfand5b coding downstream 288931 15603082 ~ 15613302 (+)
XLOC_001995 NA coding downstream 368014 15682165 ~ 15682471 (+)
XLOC_001983 NA non-coding upstream 222285 15087993 ~ 15088526 (+)
XLOC_001981 NA non-coding upstream 262029 15047006 ~ 15048782 (+)
XLOC_001980 NA non-coding upstream 268063 15036271 ~ 15042748 (+)
XLOC_001973 BX000705.2 non-coding upstream 1379093 13930848 ~ 13931718 (+)
XLOC_001997 NA non-coding downstream 623155 15937306 ~ 15953470 (+)
XLOC_001998 dre-mir-23b non-coding downstream 640428 15954579 ~ 15954659 (+)
XLOC_001999 dre-mir-27d non-coding downstream 640576 15954727 ~ 15954815 (+)
XLOC_002000 dre-mir-24-1 non-coding downstream 646684 15960835 ~ 15960914 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_04365876_04367947 KCNV2, KCNV2A coding CI01000304 null 4365611 ~ 4368201 (+)