XLOC_001985


Basic Information

Item Value
gene id XLOC_001985
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15096017 ~ 15096262 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005694
gcataggtgaattgaatcaactaaaaTTGGCccaaatgtgtgtatttatgggtgtttccgagtgatgggttgcagttggaagggcagtTAATTTTCATGGAAATTTTACATTGCACTTTCGTTTGTTTTGAATGCTTTTTACAACGAAAAATGGttcttttaagaaatgtttttattaaaagggTTTTTGGTATGGTCATTGAGTGAGTATGCTCTGCacgttaagaaaacacatgcaaagaGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005694 True 246 lncRNA 0.35 1 15096017 15096262

Neighbor

gene id symbol gene type direction distance location
XLOC_001984 si:ch211-95j8.3 coding upstream 3674 15088534 ~ 15092343 (+)
XLOC_001983 NA coding upstream 7491 15087993 ~ 15088526 (+)
XLOC_001982 parm1 coding upstream 19597 15064433 ~ 15076420 (+)
XLOC_001981 NA coding upstream 47235 15047006 ~ 15048782 (+)
XLOC_001980 NA coding upstream 53269 15036271 ~ 15042748 (+)
XLOC_001986 scpp8 coding downstream 10546 15106808 ~ 15111334 (+)
XLOC_001987 CR925756.1 coding downstream 91054 15187316 ~ 15190407 (+)
XLOC_001988 sh3bp2 coding downstream 128398 15224660 ~ 15241223 (+)
XLOC_001989 vldlr coding downstream 158750 15255012 ~ 15305767 (+)
XLOC_001990 kcnv2a coding downstream 214549 15310811 ~ 15314151 (+)
XLOC_001973 BX000705.2 non-coding upstream 1164299 13930848 ~ 13931718 (+)
XLOC_001972 BX957308.1 non-coding upstream 1201161 13856792 ~ 13894856 (+)
XLOC_001995 NA non-coding downstream 585903 15682165 ~ 15682471 (+)
XLOC_001997 NA non-coding downstream 841044 15937306 ~ 15953470 (+)
XLOC_001998 dre-mir-23b non-coding downstream 858317 15954579 ~ 15954659 (+)
XLOC_001999 dre-mir-27d non-coding downstream 858465 15954727 ~ 15954815 (+)
XLOC_002000 dre-mir-24-1 non-coding downstream 864573 15960835 ~ 15960914 (+)

Expression


Co-expression Network