RNA id: TCONS_00005694


Basic Information

Item Value
RNA id TCONS_00005694
length 246
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id XLOC_001985
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15096017 ~ 15096262 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcataggtgaattgaatcaactaaaaTTGGCccaaatgtgtgtatttatgggtgtttccgagtgatgggttgcagttggaagggcagtTAATTTTCATGGAAATTTTACATTGCACTTTCGTTTGTTTTGAATGCTTTTTACAACGAAAAATGGttcttttaagaaatgtttttattaaaagggTTTTTGGTATGGTCATTGAGTGAGTATGCTCTGCacgttaagaaaacacatgcaaagaGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005693 lncRNA upstream 7491 15087993 ~ 15088526 (+) True XLOC_001983
TCONS_00005843 lncRNA upstream 47235 15047006 ~ 15048782 (+) True XLOC_001981
TCONS_00005842 lncRNA upstream 53269 15036271 ~ 15042748 (+) True XLOC_001980
TCONS_00005839 lncRNA upstream 64577 15024781 ~ 15031440 (+) False XLOC_001979
TCONS_00003891 lncRNA downstream 436054 15532316 ~ 15533217 (+) True XLOC_001993
TCONS_00005695 lncRNA downstream 585903 15682165 ~ 15682471 (+) True XLOC_001995
TCONS_00003897 lncRNA downstream 706679 15802941 ~ 15813087 (+) True XLOC_001996
TCONS_00005844 lncRNA downstream 841044 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005845 lncRNA downstream 841242 15937504 ~ 15953470 (+) False XLOC_001997
TCONS_00003866 mRNA upstream 3674 15088534 ~ 15092343 (+) True XLOC_001984
TCONS_00003865 mRNA upstream 19597 15064433 ~ 15076420 (+) True XLOC_001982
TCONS_00003862 mRNA upstream 64597 15024772 ~ 15031420 (+) False XLOC_001979
TCONS_00003863 mRNA upstream 64597 15025006 ~ 15031420 (+) False XLOC_001979
TCONS_00003864 mRNA upstream 64788 15025022 ~ 15031229 (+) False XLOC_001979
TCONS_00003867 mRNA downstream 10546 15106808 ~ 15110872 (+) False XLOC_001986
TCONS_00003869 mRNA downstream 11624 15107886 ~ 15111334 (+) False XLOC_001986
TCONS_00003868 mRNA downstream 11624 15107886 ~ 15111334 (+) True XLOC_001986
TCONS_00003870 mRNA downstream 91054 15187316 ~ 15190407 (+) True XLOC_001987
TCONS_00003871 mRNA downstream 128398 15224660 ~ 15241223 (+) True XLOC_001988
TCONS_00003854 other upstream 1164299 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 1201161 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003844 other upstream 2762648 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003843 other upstream 3321498 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003841 other upstream 3597208 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003873 other downstream 158920 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003878 other downstream 202528 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003893 other downstream 506822 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003898 other downstream 858317 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 858465 15954727 ~ 15954815 (+) True XLOC_001999