XLOC_001994 (zfand5b)


Basic Information

Item Value
gene id XLOC_001994
gene name zfand5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15603082 ~ 15613302 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003892
atagtaCACACCGAAACGGACACATCGGCGGACTAGCAGCACAGACTGCCGCGGAGGGTTTCACATACACACCGTCTCTTACTTTGGGAGCTTCTCTTTTTACTCAAATAAGGAATTGCCTATTTTTGGAGAGATGGCCCAGGAGACCAATCAAAGCCCCGTGCCCATGCTCTGTGCCACTGGCTGCGGTTTCTATGGTAACCCTCGGACCAATGGCATGTGCTCGGTCTGTTACAAAGAGCATCTAATGCGGCAAAACAACGGTGGAGTCAGTCCTATTAGCACAATGGCTTCCAGCAGTGTCACCAGTAGTCCTACCTCTGAAGCCTCAGCCATCCAGATCATTGAAGCTACGCTTAACAACTCTTCTGCTGCTAGCGCTGAGTCGCCCTGCGCAGCCGCCGCCGCTGCCCTTCCGGTTACACAACAGATGACTGAGATGAGCATTTCCTGTGAAGATGATGCCGCCTCGCCAAAAGTAGATCTTCCTGAGCCAGTTGTCACTCAGCCCACAGCGTCCAGCGCACCTCCAAGCACAGCTGAAGAGGAGGCCAAAACCGCCGGAGCCCCCAAACCCAAGAAGAACAGATGCTTCATGTGCCGCAAGAAGGTCGGCCTGACGGGGTTCGACTGCCGCTGTGGGAATCTCTTCTGTGGTCTCCATCGCTACTCAGACAAGCACAACTGCCCGTACGACTACAAGGCCGAAGCCGCCGCCAAGATCCGCAAGGAGAATCCAGTGGTGGTGGCCGATAAAATCCAGAGAATATAAAGCTCTCGTCCGCCGCTTCACCTCCATTTAGCGAGAGACGAGAGGAAAGGACTCGCACTTTGACCTGTGATTCTAAAGACTAGTTTTTTTAATTACCGTATGGGGAAGAAGCCGCTTTCTAAGCCAATGCATGAGTGATCACCGTCTCCATCTTTCTGTTGTCAGTAAATGAGCTTCACATTGAAACGAAcgagaggaagaaaaaaagaaaacgtgtgtgtgtgtgtgtttgtttgtgtgtgaatgtgtggtcATTGGTTTAGTCTGTGTTGTGGACTCTTGAAGACTGTTACGGCTCTGAGCGCCGGCGGAGCAGCAGTGCATGGCTGGCTCATGTAGCACACGGACGCTCTTCACTTCCTCATGGAGTCGCCTTCACCACACTAGCAGACGCTTTCCCGTGATTCAACTCTtcaagtgtttctttttttttttttttttaaaccgttCAGCGACTttgtgagagaaaaaaatattacataacaaTCCAAATCAGATGGTTTAACGCAGCCAGACCAGAATGCTTCAGTTTTGACAGAGCACATCCAACAGTTGCAGGCTTAGATGGGGCAACTAATgcaaaaccattgacttctgatCCTTTAAGACATTTGATGAATACGATGATTTAGTTTGAGTTGTAATGTGACGGCAGTTTCGGGGCTGGTTCAGAGAGTTGTGGGGGTTTTTAAGTGGGTGTTTTGCATGGTTCGTGAATTGAGTATTTTACAGTTGACTGCAAACTACAGGTCCGTTTCTTTCTGCTTCACTCttcttctgtttgtgtgtgtgattgatctTTTCAGTGGGTATTGACTGTGCTGTTGTTTAGTGTCATTCAATCAGATCTTTGAGTGTCGTCACTCGGTGAACGCCGTGGtcatttttctgtctgttttcCAGGTTTTGGGTCTGGCTGCTCAGTGCTGTTTTGTTTTAGAGATTTGAGTTTACACAGTAAAACTAACCTTTTGATTTTAGTTATGCAAGTTTGTACAAACcatctttatttattatatgtagtGCGCATATAATCTTGTTACCCGACATTACTGAGAAATTGTATcatgtaaataaaattatgtacAGAGATATCATTAAAA
>TCONS_00003893
agtaCACACCGAAACGGACACATCGGCGGACTAGCAGCACAGACTGCCGCGGAGGGTTTCACATACACACCGTCTCTTACTTTGGGAGCTTCTCTTTTTACTCAAATAAGGCAACCAGGCAGGGATATACGGATCAGAATGGCCAACACATGGAAGTAGGATGAAAAAAACAACCCATTTTTGGCTTTATCGAAATATGAGGCCATGCgtagggaggaggaggagggcgcTACGCAAAACAAGCTCCTACTAGAGGTGTATGATGTAATGGAGGCAGGTCAGGACGATCAGGGGTATTTATAGTCTGAGCACACTGCTGTTCGCATGGTGGAGGCTGTTCAGAACAACATGTCACATTGCACCCTTGTGATGGATGAAAACTAATCCAGCCATCCATGTGAGCGAGGgccagcagacacacacacgtgATGCAGCCCATTTTCAGGGGAAAACCTCTGACGGAGCGGAGGTGAAATGCTGCAGTCTTGTTTACTTGGAGACGAGGGCCCCTCGTTCAAACTGCGGCCCCTCTTGACAGATGTCAAGTTTATTGCTCGAAAGTGTCAGTGTTAAATGCTGTCGCTTTGGGGCCTTGGAGCTGTAATCTGTCTCTGGTTGAACACTGTTCCAACGGTTCTCTCTACACTACTGATATATAGGCAGtgcttatacacaaacacaacatggTTCATCTGCAGGTTTGAGGGAAATCTATGTCTTAAAGATGACTAGTcgcaaaacattatttacaaaaataaaaataatggaaTTGATgtgaattgtattttttgtaatgaaTATAAGTAGACTGCTTTGCACTTGT
>TCONS_00003894
ATGGCCCAGGAGACCAATCAAAGCCCCGTGCCCATGCTCTGTGCCACTGGCTGCGGTTTCTATGGTAACCCTCGGACCAATGGCATGTGCTCGGTCTGTTACAAAGAGCATCTAATGCGGCAAAACAACGGTGGAGTCAGTCCTATTAGCACAATGGCTTCCAGCAGTGTCACCAGTAGTCCTACCTCTGAAGCCTCAGCCATCCAGATCATTGAAGCTACGCTTAACAACTCTTCTGCTGCTAGCGCTGAGTCGCCCTGCGCAGCCGCCGCCGCTGCCCTTCCGGTTACACAACAGATGACTGAGATGAGCATTTCCTGTGAAGATGATGCCGCCTCGCCAAAAGTAGATCTTCCTGAGCCAGTTGTCACTCAGCCCACAGCGTCCAGCGCACCTCCAAGCACAGCTGAAGAGGAGGCCAAAACCGCCGGAGCCCCCAAACCCAAGAAGAACAGATGCTTCATGTGCCGCAAGAAGGTCGGCCTGACGGGGTTCGACTGCCGCTGTGGGAATCTCTTCTGTGGTCTCCATCGCTACTCAGACAAGCACAACTGCCCGTACGACTACAAGGCCGAAGCCGCCGCCAAGATCCGCAAGGAGAATCCAGTGGTGGTGGCCGATAAAATCCAGAGAATATAAAGCTCTCGTCCGCCGC

Function

symbol description
zfand5b Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human ZFAND5 (zinc finger AN1-type containing 5).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-875 Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human ZFAND5 (zinc finger AN1-type containing 5).

Ensembl:

ensembl_id ENSDARG00000002271

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003892 False 1875 mRNA 0.47 5 15603082 15613302
TCONS_00003893 False 823 processed_transcript 0.46 2 15603084 15605143
TCONS_00003894 True 655 mRNA 0.56 4 15608326 15612215

Neighbor

gene id symbol gene type direction distance location
XLOC_001993 erbin coding upstream 3933 15454745 ~ 15599149 (+)
XLOC_001992 nln coding upstream 151865 15408501 ~ 15451217 (+)
XLOC_001991 trappc13 coding upstream 220957 15340768 ~ 15382125 (+)
XLOC_001990 kcnv2a coding upstream 288931 15310811 ~ 15314151 (+)
XLOC_001989 vldlr coding upstream 297315 15255012 ~ 15305767 (+)
XLOC_001995 NA coding downstream 68863 15682165 ~ 15682471 (+)
XLOC_001996 apba1b coding downstream 163762 15777064 ~ 15813279 (+)
XLOC_001997 NA coding downstream 324004 15937306 ~ 15953470 (+)
XLOC_001998 dre-mir-23b coding downstream 341277 15954579 ~ 15954659 (+)
XLOC_001999 dre-mir-27d coding downstream 341425 15954727 ~ 15954815 (+)
XLOC_001985 NA non-coding upstream 506820 15096017 ~ 15096262 (+)
XLOC_001983 NA non-coding upstream 514556 15087993 ~ 15088526 (+)
XLOC_001981 NA non-coding upstream 554300 15047006 ~ 15048782 (+)
XLOC_001980 NA non-coding upstream 560334 15036271 ~ 15042748 (+)
XLOC_001973 BX000705.2 non-coding upstream 1671364 13930848 ~ 13931718 (+)
XLOC_002000 dre-mir-24-1 non-coding downstream 347533 15960835 ~ 15960914 (+)

Expression


Co-expression Network