XLOC_001983


Basic Information

Item Value
gene id XLOC_001983
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15087993 ~ 15088526 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005693
atgtaaaacAATAACCAGGTTGTGTGGCTGCAGTTTGTGCAATAATCACACAACTATTTCAATTACAACATCGGCTCATTAGGACTTTCCAATAATAACATCATAAAAACTGTGGAATAAACCTCAGACTTCTGGTGAACCCAAAAAATACCTGTTACACCCAACAAAATATAACCAAAATATGACAGATGTCTTCAACAGCTTTCTGACTACATAGTTTTCTATAAACTCGATATTGTGTAACTATCATATTAAAAATTATTGTAGATCTTATCGTGAGGAACGTTTACCACATCTGATCTTATTGCAACATATAATATCTCAATTATGACTCTGTGTATATTTCACAGATGAGTGAAAACCACTTGTGTAACCAGGAATAAGACGAAAGGTGTTATTAAGTGTTTAATTAACCAAAAGGGAAAGCAGAAAttcatcatttttattatgttttgttgaTTAACGACATCATAGCATTACAAGCCTCTTCTGATTGGTTGGATAAATAATTTATATGCACTCTGAAGGTTGCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005693 True 534 lncRNA 0.32 1 15087993 15088526

Neighbor

gene id symbol gene type direction distance location
XLOC_001982 parm1 coding upstream 11573 15064433 ~ 15076420 (+)
XLOC_001981 NA coding upstream 39211 15047006 ~ 15048782 (+)
XLOC_001980 NA coding upstream 45245 15036271 ~ 15042748 (+)
XLOC_001979 si:dkey-88l16.5 coding upstream 56553 15024772 ~ 15031440 (+)
XLOC_001978 si:dkey-88l16.3 coding upstream 70354 14963898 ~ 15017639 (+)
XLOC_001984 si:ch211-95j8.3 coding downstream 8 15088534 ~ 15092343 (+)
XLOC_001985 NA coding downstream 7491 15096017 ~ 15096262 (+)
XLOC_001986 scpp8 coding downstream 18282 15106808 ~ 15111334 (+)
XLOC_001987 CR925756.1 coding downstream 98790 15187316 ~ 15190407 (+)
XLOC_001988 sh3bp2 coding downstream 136134 15224660 ~ 15241223 (+)
XLOC_001973 BX000705.2 non-coding upstream 1156275 13930848 ~ 13931718 (+)
XLOC_001972 BX957308.1 non-coding upstream 1193137 13856792 ~ 13894856 (+)
XLOC_001971 NA non-coding upstream 1783716 13298724 ~ 13304277 (+)
XLOC_001995 NA non-coding downstream 593639 15682165 ~ 15682471 (+)
XLOC_001997 NA non-coding downstream 848780 15937306 ~ 15953470 (+)
XLOC_001998 dre-mir-23b non-coding downstream 866053 15954579 ~ 15954659 (+)
XLOC_001999 dre-mir-27d non-coding downstream 866201 15954727 ~ 15954815 (+)

Expression


Co-expression Network