XLOC_001981


Basic Information

Item Value
gene id XLOC_001981
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15047006 ~ 15048782 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005843
TTTTACCTCATTTACACCTTGTTGCTGTCACATGCAACTGTTTTACagttaataattaattagccTAATTTATTGCCGTaatatatttcatgttttgtgctGCAGGTCAATTTATGTAACGGGTACAAGTTTGTTTTGATGCTGACTGAAGGTACAAACTCAGCTCATTGTTCTACAACAGCTTCTCGCTCATTttcttcaaataaaaaaacaggaaaataacaCAACATAGACGTTTACTTCTTCATTGCTATCATTTCATCGTTCACTTGACTCATGAATCACCTGACAATTCAAACATGACCCATAATCTTGTGTGGAGATCAAACTGAAACAACCAGTATTACTAGTTTTACTGCATTACAGAAACCATGATGACTAACTTTAGCTTGTACTGTATTTCCGCAGCTATGGAAAATATTGCACATTCAATGCTTTCAAAGGACATTGGGTATAAAATCGAACCTTGCGATATTAATGTGATACCGATTATATGTTCATTAAGGTGCAAGAGCTGATTTTAAACCTACATTTTTTGCTATTGTACAAATTCAGAGTTTTTTAGCTTCAGGGTGCAAATGGAAAGCACAAACAGTAACTGCTGTAAACATTTAAAGTACACTTGTATACTTGTAAAAAAATGCTGTAGAAAATTCACAATtcatacatacaaatatacatcAAACAAGACATTGAATTGCAGTTAAACACAGAAGCAGAAAGGCTAGTATTCTCATGAAACATACTTCCAAAAATATGTGTacttatacattgtaaaaaaaaaaaaactggtgtaACAACAATTCCAGGAATTTACACTCCAGTTGTTCAAACAGCTTCGTCATCAACACTCACAAAATTGTAAAggaatattcacagtatgtcttaacCAAGTTAATACCTCTAGAGATCAGCATCATACGGCCTTCCAGTGTAGGATGCGTTGACTGATGCCAAATCTCTCCCTCTGTCTGTTCCTCtacctctgtctctctctctggttTTGGCTCTTGGGAAGTCCAGTTGCCACCACCAAGCCGAGAGCAGTTACGATCAAGGATGCGACCATCATTCCTTGAGCAATCGGAATGATTTGGTTTTTGAAGTAGATTTGGTCGTTGCCTTGTTGGTTGCATGTTTGGGTTCTAGTTGATGAGTAGGTCAAGCAGCTGTCCCAGATTCCCTGGCCCACCACCATATCTGTAGAGTAGCCTGGCACGTTGTTGACAGTGCGCCAATTTGTTGCAACAGTGCTGGTCAGGTCCAGGACCCAGCCGCAGGGCGCCATGACCATCCCGAATATCAGGATCCCCGGAGTCCGCATGGTTGAGGGTTGAGCTGCTGTCTGTGTCTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005843 True 1355 lncRNA 0.39 2 15047006 15048782

Neighbor

gene id symbol gene type direction distance location
XLOC_001980 NA coding upstream 4258 15036271 ~ 15042748 (+)
XLOC_001979 si:dkey-88l16.5 coding upstream 15566 15024772 ~ 15031440 (+)
XLOC_001978 si:dkey-88l16.3 coding upstream 29367 14963898 ~ 15017639 (+)
XLOC_001977 si:dkey-88l16.4 coding upstream 97639 14947003 ~ 14949367 (+)
XLOC_001976 katnal2 coding upstream 525816 14499201 ~ 14521190 (+)
XLOC_001982 parm1 coding downstream 15651 15064433 ~ 15076420 (+)
XLOC_001983 NA coding downstream 39211 15087993 ~ 15088526 (+)
XLOC_001984 si:ch211-95j8.3 coding downstream 39752 15088534 ~ 15092343 (+)
XLOC_001985 NA coding downstream 47235 15096017 ~ 15096262 (+)
XLOC_001986 scpp8 coding downstream 58026 15106808 ~ 15111334 (+)
XLOC_001973 BX000705.2 non-coding upstream 1115288 13930848 ~ 13931718 (+)
XLOC_001972 BX957308.1 non-coding upstream 1152150 13856792 ~ 13894856 (+)
XLOC_001971 NA non-coding upstream 1742729 13298724 ~ 13304277 (+)
XLOC_001966 CR388225.1 non-coding upstream 2713637 12333253 ~ 12333369 (+)
XLOC_001995 NA non-coding downstream 633383 15682165 ~ 15682471 (+)
XLOC_001997 NA non-coding downstream 888524 15937306 ~ 15953470 (+)
XLOC_001998 dre-mir-23b non-coding downstream 905797 15954579 ~ 15954659 (+)

Expression


Co-expression Network