XLOC_001977 (si:dkey-88l16.4)


Basic Information

Item Value
gene id XLOC_001977
gene name si:dkey-88l16.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 14947003 ~ 14949367 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003858
CCTGCTGGAATGACTCTATCTGCAAATGGACGTGATTGTGAAGATGTCAATGAGTGTGCCCAGTCTGTTAGTCCCTGTATGCACTTGTGTTCAAATACACCAGGGTCATATCGGTGTCAGTGCGCGAATGGTTTTAAACCTCTTGGCAATGGCTCTTGTGAAGCCCAAGGGCCTGTGATGAAGATTTTGACCACAAGGAAGGGTCTCGTCGGGTTAGTGAATGTAAAGACCAGAGTGTTTGAGCCACTCTTTACAACTGAGACTGAACCTGTAGCCATGACCTCTGATATCCAGAGGAACCTCATTTACTGGGCTGATGGAAATGGAGGCATCTTTAAGACGTATAACCGGAAGAGTACAGTTCTGTATTCAGGTTAGATGAGTCACAGTTTGCAGATAAATTGGTGTATAAATGCTTAAGGTTTGACAtggaattaatatattttaaaatattttaaatttatttttataaagataataatgacaacaacaataaatgttttatttatttattta

Function

symbol description
si:dkey-88l16.4 Predicted to enable low-density lipoprotein particle receptor activity. Predicted to be part of receptor complex. Predicted to be active in plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092525

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003858 True 516 mRNA 0.39 3 14947003 14949367

Neighbor

gene id symbol gene type direction distance location
XLOC_001976 katnal2 coding upstream 425813 14499201 ~ 14521190 (+)
XLOC_001975 sigmar1 coding upstream 452764 14488625 ~ 14494239 (+)
XLOC_001974 si:dkey-286h21.1 coding upstream 734202 14210667 ~ 14212801 (+)
XLOC_001973 BX000705.2 coding upstream 1015285 13930848 ~ 13931718 (+)
XLOC_001972 BX957308.1 coding upstream 1052147 13856792 ~ 13894856 (+)
XLOC_001978 si:dkey-88l16.3 coding downstream 14531 14963898 ~ 15017639 (+)
XLOC_001979 si:dkey-88l16.5 coding downstream 75405 15024772 ~ 15031440 (+)
XLOC_001980 NA coding downstream 86904 15036271 ~ 15042748 (+)
XLOC_001981 NA coding downstream 97639 15047006 ~ 15048782 (+)
XLOC_001982 parm1 coding downstream 115066 15064433 ~ 15076420 (+)
XLOC_001971 NA non-coding upstream 1642726 13298724 ~ 13304277 (+)
XLOC_001966 CR388225.1 non-coding upstream 2613634 12333253 ~ 12333369 (+)
XLOC_001965 NA non-coding upstream 3017871 11928089 ~ 11929132 (+)
XLOC_001983 NA non-coding downstream 138626 15087993 ~ 15088526 (+)
XLOC_001985 NA non-coding downstream 146650 15096017 ~ 15096262 (+)
XLOC_001995 NA non-coding downstream 732798 15682165 ~ 15682471 (+)

Expression


Co-expression Network