XLOC_001965


Basic Information

Item Value
gene id XLOC_001965
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11928089 ~ 11929132 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005692
tttctattcacctaattatattatttattttatgccatTTTGTGTAGTCAAGGAGAAATTTGGTATATCTCCAGATCATACCATTTATTTGGCAGACGAGACCGGAACTGAAGTGGATGAAGATGTTTTTGCTGATATTATGGAACAAAAGCCTGACACACTTTGGACAATTGTTGATTCTATGGCTACAGAAGaTTCTACTGCCCCACCACCCTCTCAATTTTCAAGTGAAATGAAAACGGTGTCACCAACAGACAGCTGTGTTTCTGTTCTCTCAACAAAAAGACCTCGAACTGACGACCAATTTACTGAGGCCAAGGAGGTAGATTACATGATTAAAACCTATATAAATGTTGCCTTATGACATGATTTGATCaatttatctttgtttttaagCTTGTAAAAGATgtattggggaaaaaaagtgcAGGGGAGAAGATTTTTCAGGAGTACAGAGCAACTGGGAAAATCACAGATTCTACAAGGCGAATTCTTGTGAATGCTGTAGTTGGAGACATGATTGAAAAACATGGgtaaagtatataaatataagctGTTTTTACAATGCATTGTCATcccaattaaagggatagttcacccaaaactgaaaattttgtcatcatttactcaccatttacttgttttttttctttctgctgaacacaaaagaagatatttgaataatgttgtaaacatgtaaccattttcccactgatgggttgcagctagaagggcatccgctgcgtaaaacatatgctggataatttggtggttcattccgctgtggcgacaccagattaataaaggggctaagccgaaaagaaaatgaatgaatgaacatgtaaccattgattgTGCtaaggaaatcaatggttacagagtTCTAAAAGAATTTATTAAAACCACTAATTTGTGTTCActagaaaaaataaactcaatgGTTTCAAAgaacttgaggatgagtaaatag
>TCONS_00005691
tttctattcacctaattatattatttattttatgccatTTTGTGTAGTCAAGGAGAAATTTGGTATATCTCCAGATCATACCATTTATTTGGCAGACGAGACCGGAACTGAAGTGGATGAAGATGTTTTTGCTGATATTATGGAACAAAAGCCTGACACACTTTGGACAATTGTTGATTCTATGGCTACAGAAGaTTCTACTGCCCCACCACCCTCTCAATTTTCAAGTGAAATGAAAACGGTGTCACCAACAGACAGCTGTGTTTCTGTTCTCTCAACAAAAAGACCTCGAACTGACGACCAATTTACTGAGGCCAAGGAGCTTGTAAAAGATgtattggggaaaaaaagtgcAGGGGAGAAGATTTTTCAGGAGTACAGAGCAACTGGGAAAATCACAGATTCTACAAGGCGAATTCTTGTGAATGCTGTAGTTGGAGACATGATTGAAAAACATGGgtaaagtatataaatataagctGTTTTTACAATGCATTGTCATcccaattaaagggatagttcacccaaaactgaaaattttgtcatcatttactcaccatttacttgttttttttctttctgctgaacacaaaagaagatatttgaataatgttgtaaacatgtaaccattttcccactgatgggttgcagctagaagggcatccgctgcgtaaaacatatgctggataatttggtggttcattccgctgtggcgacaccagattaataaaggggctaagccgaaaagaaaatgaatgaatgaacatgtaaccattgattgTGCtaaggaaatcaatggttacagagtTCTAAAAGAATTTATTAAAACCACTAATTTGTGTTCActagaaaaaataaactcaatgGTTTCAAAgaacttgaggatgagtaaatag

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0043034 costamere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005692 False 970 lncRNA 0.35 2 11928089 11929132
TCONS_00005691 True 896 lncRNA 0.36 3 11928089 11929132

Neighbor

gene id symbol gene type direction distance location
XLOC_001964 NA coding upstream 103 11926073 ~ 11927986 (+)
XLOC_001962 ppwd1 coding upstream 139524 11767791 ~ 11788565 (+)
XLOC_001963 CR925713.2 coding upstream 153570 11774405 ~ 11774519 (+)
XLOC_001961 NA coding upstream 262126 11652594 ~ 11665963 (+)
XLOC_001960 NA coding upstream 409350 11513386 ~ 11518739 (+)
XLOC_001966 CR388225.1 coding downstream 404121 12333253 ~ 12333369 (+)
XLOC_001967 CT990561.1 coding downstream 587927 12517059 ~ 12730451 (+)
XLOC_001968 lpar1 coding downstream 1071238 13000370 ~ 13064110 (+)
XLOC_001969 rassf6 coding downstream 1280448 13209580 ~ 13236012 (+)
XLOC_001970 tmem267 coding downstream 1349947 13279079 ~ 13287169 (+)
XLOC_001959 BX640403.1 non-coding upstream 429280 11498693 ~ 11498809 (+)
XLOC_001971 NA non-coding downstream 1369592 13298724 ~ 13304277 (+)
XLOC_001972 BX957308.1 non-coding downstream 1927660 13856792 ~ 13894856 (+)
XLOC_001973 BX000705.2 non-coding downstream 2001716 13930848 ~ 13931718 (+)
XLOC_001980 NA non-coding downstream 3107139 15036271 ~ 15042748 (+)

Expression


Co-expression Network