XLOC_001979 (si:dkey-88l16.5)


Basic Information

Item Value
gene id XLOC_001979
gene name si:dkey-88l16.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15024772 ~ 15031440 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003862
gtgcgttgccttTTTTTCTCATGGTGACTTTCTATGATGACTCTTGAATTCGGCTATCTACTAAAAATGCCTTCAGTTCAGCATGTCTGTACCTGCCATGAGTCCGCTGGATAAAGATAGCAATGCGTCTCGACAACCGGATGCATGTGCTGATGTCACATGTCAGTTTGGCAGCTGTGTGTTGGTGCATGATGAGCCTGTATGTGAGTGTATGCTGGGATATACTGGGGAAACCTGTCAGGAAACAGTCAATGAGACTCTGGTTGTCCCTCTCACTCTCGGCGTCCTGACTGTCACCATTTTCTGCATTGTCCTGTTATTTTCCATTGCAATTTTCTGTCAAAAGCTAAAGGCAAAAAAGAGAAAGAAGGCGGCTGAACAAGCTTTGTTAAGAAATAGAGAGTGTCATTGACATGTCTTAATGCGTCATTCCAGAGAAAAGTACAGACAACACATCTCTTACACGCTACATGAAAGAACATTCtagcattacatttaaatttatattcattGTGCATGAATTAGAGCTGTGCTGTTGTTAGAAGAATAGAAGTGTCACTGAATGTACTCCACAAAAAGTATTTTAGGTCAAAAAGTGCATAAAGTTCACAAGATTTTTTTGGATTATTTTTCTCCTGTACTTGCGGGGGCCATACATGTGCATTCAAATAAAAGAAACTAGTTGCTGAGACATGCCAAGCATTTCAGTGCTATTGTGGATTTAGATTAAGGTCATGCGTGACAGGAGAGTCTGAATGACTGAAAGCAGATGAGATTCGTAGACTGATGGATCAGTATTTTTCTTTGACGTGTTCATGATATACAGTCACACTATTCTCAAGGCCCTCTGTtgcttttaattttgtaattacaCAACTGTTTACTGTGcatgatatatttatattaacattaCAAGCTTTCTGTACAGTATTTTCTAATAAAGATTTGTTTATGACTGC
>TCONS_00005839
cttTTTTTCTCATGGTGACTTTCTATGATGACTCTTGAATTCGGCTATCTACTAAAAATGCCTTCAGCTAAAGTGGTACAGAACAGCAGGAGTCCGGTTTCTCTGAGTTTACCCGTGCTGTGGTAAAAGGTTCAGCATGTCTGTACCTGCCATGAGTCCGCTGGATAAAGATAGCAATGCGTCTCGACAACCGGATGCATGTGCTGATGTCACATGTCAGTTTGGCAGCTGTGTGTTGGTGCATGATGAGCCTGTATGTGAGTGTATGCTGGGATATACTGGGGAAACCTGTCAGGAAACAGTCAATGAGACTCTGGTTGTCCCTCTCACTCTCGGCGTCCTGACTGTCACCATTTTCTGCATTGTCCTGTTATTTTCCATTGCAATTTTCTGTCAAAAGCTAAAGGCAAAAAAGAGAAAGAAGGCGGCTGAACAAGCTTTGTTAAGAAATAGAGAGTGTCATTGACATGTCTTAATGCGTCATTCCAGAGAAAAGTACAGACAACACATCTCTTACACGCTACATGAAAGAACATTCtagcattacatttaaatttatattcattGTGCATGAATTAGAGCTGTGCTGTTGTTAGAAGAATAGAAGTGTCACTGAATGTACTCCACAAAAAGTATTTTAGGTCAAAAAGTGCATAAAGTTCACAAGATTTTTTTGGATTATTTTTCTCCTGTACTTGCGGGGGCCATACATGTGCATTCAAATAAAAGAAACTAGTTGCTGAGACATGCCAAGCATTTCAGTGCTATTGTGGATTTAGATTAAGGTCATGCGTGACAGGAGAGTCTGAATGACTGAAAGCAGATGAGATTCGTAGACTGATGGATCAGTATTTTTCTTTGACGTGTTCATGATATACAGTCACACTATTCTCAAGGCCCTCTGTtgcttttaattttgtaattacaCAACTGTTTACTGTGcatgatatatttatattaacattaCAAGCTTTCTGTACAGTATTTTCTAATAAAGATTTGTTTATGACTGCtaatttttgtcttatttcag
>TCONS_00005840
AaattaacccagctttctggaatacaaCCTAGAGCTCACTGTTTATCGACGGCCGCATGGCGcgcattcaaacacatacacacaaccaaCAGTGATTTAATTGCTGTTACTGCTGCTATATTTACCTGTCCCTATTTGTTCTGTCAGCTAAAGTGGTACAGAACAGCAGGAGTCCGGTTTCTCTGAGTTTACCCGTGCTGTGGTAAAAGGTTCAGCATGTCTGTACCTGCCATGAGTCCGCTGGATAAAGATAGCAATGCGTCTCGACAACCGGATGCATGTGCTGATGTCACATGTCAGTTTGGCAGCTGTGTGTTGGTGCATGATGAGCCTGTATGTGAGTGTATGCTGGGATATACTGGGGAAACCTGTCAGGAAACAGTCAATGAGACTCTGGTTGTCCCTCTCACTCTCGGCGTCCTGACTGTCACCATTTTCTGCATTGTCCTGTTATTTTCCATTGCAATTTTCTGTCAAAAGCTAAAGGCAAAAAAGAGAAGGCGGCTGAACAAGCTTTGTTAAGAAATAGAGAGTGTCATTGACATGTCTTAATGCGTCATTCCAGAGAAAAGTACAGACAACACATCTCTTACACGCTACATGAAAGAACATTCtagcattacatttaaatttatattcattGTGCATGAATTAGAGCTGTGCTGTTGTTAGAAGAATAGAAGTGTCACTGAATGTACTCCACAAAAAGTATTTTAGGTCAAAAAGTGCATAAAGTTCACAAGATTTTTTTGGATTATTTTTCTCCTGTACTTGCGGGGGCCATACATGTGCATTCAAATAAAAGAAACTAGTTGCTGAGACATGCCAAGCATTTCAGTGCTATTGTGGATTTAGATTAAGGTCATGCGTGACAGGAGAGTCTGAATGACTGAAAGCAGATGAGATTCGTAGACTGATGGATCAGTATTTTTCTTTGACGTGTTCATGATATACAGTCACACTATTCTCAAGGCCCTCTGTtgcttttaattttgtaattacaCAACTGTTTACTGTGcatgatatatttatattaacattaCAAGCTTTCTGTACAGTATTTTCTAATAAAGATTTGTTTATGACTGCtaatttttgtcttatttcag
>TCONS_00003863
ttctggaatacaaCCTAGAGCTCACTGTTTATCGACGGCCGCATGGCGcgcattcaaacacatacacacaaccaaCAGTGATTTAATTGCTGTTACTGCTGCTATATTTACCTGTCCCTATTTGTTCTGTCAGCTAAAGTGGTACAGAACAGCAGGAGTCCGGTTTCTCTGAGTTTACCCGTGCTGTGGTAAAAGGTTCAGCATGTCTGTACCTGCCATGAGTCCGCTGGATAAAGATAGCAATGCGTCTCGACAACCGGATGCATGTGCTGATGTCACATGTCAGTTTGGCAGCTGTGTGTTGGTGCATGATGAGCCTGTATGTGAGTGTATGCTGGGATATACTGGGGAAACCTGTCAGGAAACAGTCAATGAGACTCTGGTTGTCCCTCTCACTCTCGGCGTCCTGACTGTCACCATTTTCTGCATTGTCCTGTTATTTTCCATTGCAATTTTCTGTCAAAAGCTAAAGGCAAAAAAGAGAAAGAAGGCGGCTGAACAAGCTTTGTTAAGAAATAGAGAGTGTCATTGACATGTCTTAATGCGTCATTCCAGAGAAAAGTACAGACAACACATCTCTTACACGCTACATGAAAGAACATTCtagcattacatttaaatttatattcattGTGCATGAATTAGAGCTGTGCTGTTGTTAGAAGAATAGAAGTGTCACTGAATGTACTCCACAAAAAGTATTTTAGGTCAAAAAGTGCATAAAGTTCACAAGATTTTTTTGGATTATTTTTCTCCTGTACTTGCGGGGGCCATACATGTGCATTCAAATAAAAGAAACTAGTTGCTGAGACATGCCAAGCATTTCAGTGCTATTGTGGATTTAGATTAAGGTCATGCGTGACAGGAGAGTCTGAATGACTGAAAGCAGATGAGATTCGTAGACTGATGGATCAGTATTTTTCTTTGACGTGTTCATGATATACAGTCACACTATTCTCAAGGCCCTCTGTtgcttttaattttgtaattacaCAACTGTTTACTGTGcatgatatatttatattaacattaCAAGCTTTCTGTACAGTATTTTCTAATAAAGATTTGTTTATGACTGC
>TCONS_00003864
AGAGCTCACTGTTTATCGACGGCCGCATGGCGcgcattcaaacacatacacacaaccaaCAGTGATTTAATTGCTGTTACTGCTGCTATATTTACCTGTCCCTATTTGTTCTGTCAGCTAAAGTGGTACAGAACAGCAGGAGTCCGGTTTCTCTGAGTTTACCCGTGCTGTGGTAAAAGGGTGGGTCTGTTTTCTGCTTGGGCTTTCTTCAGCTCTCTTTACTCATTTGTATACATTTGTGTATTGTAAGCTGGGGACCTACATTTTTGCATTCCAGTTTTGGTTTTGACTGTTTTCCACCTTTGACTTTGGCAAAATTTTCAGCATGTCTGTACCTGCCATGAGTCCGCTGGATAAAGATAGCAATGCGTCTCGACAACCGGATGCATGTGCTGATGTCACATGTCAGTTTGGCAGCTGTGTGTTGGTGCATGATGAGCCTGTATGTGAGTGTATGCTGGGATATACTGGGGAAACCTGTCAGGAAACAGTCAATGAGACTCTGGTTGTCCCTCTCACTCTCGGCGTCCTGACTGTCACCATTTTCTGCATTGTCCTGTTATTTTCCATTGCAATTTTCTGTCAAAAGCTAAAGGCAAAAAAGAGAAAGAAGGCGGCTGAACAAGCTTTGTTAAGAAATAGAGAGTGTCATTGACATGTCTTAATGCGTCATTCCAGAGAAAAGTACAGACAACACATCTCTTACACGCTACATGAAAGAACATTCtagcattacatttaaatttatattcattGTGCATGAATTAGAGCTGTGCTGTTGTTAGAAGAATAGAAGTGTCACTGAATGTACTCCACAAAAAGTATTTTAGGTCAAAAAGTGCATAAAGTTCACAAGATTTTTTTGGATTATTTTTCTCCTGTACTTGCGGGGGCCATACATGTGCATTCAAATAAAAGAAACTAGTTGCTGAGACATGCCAAGCATTTCAGTGCTATTGTGGATTTAGATTAAGGTCATGCGTGACAGGAGAGTCTGAATGACTGAAAGCA
>TCONS_00005841
ACTGTTTATCGACGGCCGCATGGCGcgcattcaaacacatacacacaaccaaCAGTGATTTAATTGCTGTTACTGCTGCTATATTTACCTGTCCCTATTTGTTCTGTCAGCTAAAGTGGTACAGAACAGCAGGAGTCCGGTTTCTCTGAGTTTACCCGTGCTGTGGTAAAAGGCATGTCTGTACCTGCCATGAGTCCGCTGGATAAAGATAGCAATGCGTCTCGACAACCGGATGCATGTGCTGATGTCACATGTCAGTTTGGCAGCTGTGTGTTGGTGCATGATGAGCCTGTATGTGAGTGTATGCTGGGATATACTGGGGAAACCTGTCAGGAAACAGTCAATGAGACTCTGGTTGTCCCTCTCACTCTCGGCGTCCTGACTGTCACCATTTTCTGCATTGTCCTGTTATTTTCCATTGCAATTTTCTGTCAAAAGCTAAAGGCAAAAAAGAGAAAGAAGGCGGCTGAACAAGCTTTGTTAAGAAATAGAGAGTGTCATTGACATGTCTTAATGCGTCATTCCAGAGAAAAGTACAGACAACACATCTCTTACACGCTACATGAAAGAACATTCtagcattacatttaaatttatattcattGTGCATGAATTAGAGCTGTGCTGTTGTTAGAAGAATAGAAGTGTCACTGAATGTACTCCACAAAAAGTATTTTAGGTCAAAAAGTGCATAAAGTTCACAAGATTTTTTTGGATTATTTTTCTCCTGTACTTGCGGGGGCCATACATGTGCATTCAAATAAAAGAAACTAGTTGCTGAGACATGCCAAGCATTTCAGTGCTATTGTGGATTTAGATTAAGGTCATGCGTGACAGGAGAGTCTGAATGACTGAAAGCAGATGAGATTCGTAGACTGATGGATCAGTATTTTTCTTTGACGTGTTCATGATATACAGTCACACTATTCTCAAGGCCCTCTGTtgcttttaattttgtaattacaCAACTGTTTACTGTGcatgatatatttatattaacattaCAAGCTTTCTGTACAGTATTTTCTAATAAAGATTTGTTTATGACTGCtaatttttgtcttatttcag

Function

symbol description
si:dkey-88l16.5 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-332 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000094850

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003862 False 959 mRNA 0.39 4 15024772 15031420
TCONS_00005839 False 1033 lncRNA 0.39 5 15024781 15031440
TCONS_00005840 False 1109 lncRNA 0.40 4 15024992 15031440
TCONS_00003863 False 1079 mRNA 0.40 4 15025006 15031420
TCONS_00003864 False 1011 mRNA 0.41 4 15025022 15031229
TCONS_00005841 True 1071 lncRNA 0.39 4 15025029 15031440

Neighbor

gene id symbol gene type direction distance location
XLOC_001978 si:dkey-88l16.3 coding upstream 7133 14963898 ~ 15017639 (+)
XLOC_001977 si:dkey-88l16.4 coding upstream 75405 14947003 ~ 14949367 (+)
XLOC_001976 katnal2 coding upstream 503582 14499201 ~ 14521190 (+)
XLOC_001975 sigmar1 coding upstream 530533 14488625 ~ 14494239 (+)
XLOC_001974 si:dkey-286h21.1 coding upstream 811971 14210667 ~ 14212801 (+)
XLOC_001980 NA coding downstream 4831 15036271 ~ 15042748 (+)
XLOC_001981 NA coding downstream 15566 15047006 ~ 15048782 (+)
XLOC_001982 parm1 coding downstream 32993 15064433 ~ 15076420 (+)
XLOC_001983 NA coding downstream 56553 15087993 ~ 15088526 (+)
XLOC_001984 si:ch211-95j8.3 coding downstream 57094 15088534 ~ 15092343 (+)
XLOC_001973 BX000705.2 non-coding upstream 1093054 13930848 ~ 13931718 (+)
XLOC_001972 BX957308.1 non-coding upstream 1129916 13856792 ~ 13894856 (+)
XLOC_001971 NA non-coding upstream 1720495 13298724 ~ 13304277 (+)
XLOC_001966 CR388225.1 non-coding upstream 2691403 12333253 ~ 12333369 (+)
XLOC_001965 NA non-coding upstream 3095640 11928089 ~ 11929132 (+)
XLOC_001985 NA non-coding downstream 64577 15096017 ~ 15096262 (+)
XLOC_001995 NA non-coding downstream 650725 15682165 ~ 15682471 (+)

Expression


Co-expression Network