XLOC_001986 (scpp8)


Basic Information

Item Value
gene id XLOC_001986
gene name scpp8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15106808 ~ 15111334 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003867
ctgttACTGACCCtgtgttgccttctgcctgccccgaaTCTTGCTTGTTATCTCGACTCTGAACCACGCCACCTGCCCTGAACCACGCCTGATATCtcgactctgaaccacgccgcccgCCTCTGATCAATGCCTGCTATATTACTCCTTGACAGCCAGCCGCCAGCCCTTAGACCCAGACTGAATGCCATTGATCTCCCCGTTACAAAACCGTTCTTCGCAGGATTCAAACCATGTCATTATGGTCAACTCTTCTGCGTCTCAAGTTCTCAGACGCACACAgcgagctaccagacaaactggtgtcagcgggaaagccatccacacagAGAATTTGCAGGACCAAGCCCCGGTTTACTCACATCCACCAGTATTTAAGCCACAGATGCCAGGGTAAATATATACAGACTGGGACTGTTCTATCACTGGACAAGAACATTTATACAAGGATGAATACTTTGAAGGGATTGATTCTGATGCTTTTTGTTGCGTCTGTCATTTCAAAACCATTGCATTTGTCAAGAAGCAGTTCGGACGAAAATGATTCATCCAAAGCTTCATCAAATTCCGAGTCAGATGAGAGCTCTGAGTCAAACGAGTCTGAATCGAGTGAATCTGAATCTTCTGAGGACTTCACAACCGCACAGCCTCCTACTGGTAGGCCTGCaacaaatcagccaatcactgaCAAGAAAACCACAACAGCAGCACCCGTCACCACTGCAGCAAACATCACAGACTGTGTTACTGTGAATGTGACGAGTCTTCAGATCACCACTGAAAAAAGGGGTGATAACTGAATAGCTTGGAATGTTGCTCAATCCTTTTCAtgcaaaggaaaaagaaaagagagaaTGCTTCCGAATGCTTGATGATTTCTGATGCTATGATGTTTATGTGTTaataatgaaggaaggaaggaaatagTAATGAGTAATCAAACTTTTGAAATTCACAAATAGCAGCACTGTGTTCAAGCATAAAATAAGCACTATTTTCAGtggttttattcacatttattgatGTTATTgctaacattttttttagattgtatAGAAAACAAGGATAACATTTACTAATAAACATTTCTTGCAGAATTAAAAGCTTTTAATCAGgagatagttgacccaaaaattacaatactcactatttactctcccacaaggggtttcaaaatgttttatgagtttctttttgctGTTCTGTTtccgtaaccattgacttcaatagaagAAAAAGCCTACTATGGAAGcgaatggttactggt
>TCONS_00003869
GTCATCTAATCGCAACAGGAATTTGCAGGACCAAGCCCCGGTTTACTCACATCCACCAGTATTTAAGCCACAGATGCCAGGGTAAATATATACAGACTGGGACTGTTCTATCACTGGACAAGAACATTTATACAAGGTAACTCACTCGTATCTTGAGTTATGATGCATTTATGGCTTTTTAATCTATATTGGTAACTGAATAATAATCAAATACAAGCACGCAAAtcaaatgctttaaataaaatttttattcttttgtatAGTCATTATTTAACTTAAGCAGAGCGTATtggttttaatgtgttttggtggTTTTGTTTTGTAGGATGAATACTTTGAAGGGATTGATTCTGATGCTTTTTGTTGCGTCTGTCATTTCAAAACCATTGCATTTGTCAAGAAGCAGTTCGGACGAAAATGATTCATCCAAAGCTTCATCAAATTCCGAGTCAGATGAGAGCTCTGAGTCAAACGAGTCTGAATCGAGTGAATCTGAATCTTCTGAGGACTTCACAACCGCACAGCCTCCTACTGGTAGGCCTGCaacaaatcagccaatcactgaCAAGAAAACCACAACAGCAGCACCCGTCACCACTGCAGCAAACATCACAGACTGTGTTACTGTGAATGTGACGAGTCTTCAGATCACCACTGAAAAAAGGGGTGATAACTGAATAGCTTGGAATGTTGCTCAATCCTTTTCAtgcaaaggaaaaagaaaagagagaaTGCTTCCGAATGCTTGATGATTTCTGATGCTATGATGTTTATGTGTTaataatgaaggaaggaaggaaatagTAATGAGTAATCAAACTTTTGAAATTCACAAATAGCAGCACTGTGTTCAAGCATAAAATAAGCACTATTTTCAGtggttttattcacatttattgatGTTATTgctaacattttttttagattgtatAGAAAACAAGGATAACATTTACTAATAAACATTTCTTGCAGAATTAAAAGCTTTTAATCAGgagatagttgacccaaaaattacaatactcactatttactctcccacaaggggtttcaaaatgttttatgagtttctttttgctGTTCTGTTtccgtaaccattgacttcaatagaagAAAAAGCCTACTATGGAAGcgaatggttactggtttccagctttctgtaaaatatcttcttttgtgttcaagtgaAAAAAGAAGCTCGTCACTCATTTGAaataagtaaaggatgagtaaatgatgacagaagttttatctttgggtgaactattttttTGGAATGTCTCTCCATTTTAATGTTCAGTGGGTTTTAATAATGGGTGACCTATAAAGCAAAAACCTGTAAATTAAagttgttttaaagatgttttattgTTCAAGCTTGCAACCTTCAAAAGAAATTTGAAATAAAGATGAAGAATttgaataaatttatttttaattgtatgttGGTGTATTGTATTTGTAGTACAACTGTTTTGACCTGATGTACATTGAAATGGACAAGCTGGAAATAAATTAAAGGTTATGAAACTTTGTCATATTTGTATTTTGTCTCATTTTTGTAGACCTTAGGAAGAGGGAAAATGTACTTTTACAATTTTCTGAAACT
>TCONS_00003868
GTCATCTAATCGCAACAGGAATTTGCAGGACCAAGCCCCGGTTTACTCACATCCACCAGTATTTAAGCCACAGATGCCAGGGTAAATATATACAGACTGGGACTGTTCTATCACTGGACAAGAACATTTATACAAGGATGAATACTTTGAAGGGATTGATTCTGATGCTTTTTGTTGCGTCTGTCATTTCAAAACCATTGCATTTGTCAAGAAGCAGTTCGGACGAAAATGATTCATCCAAAGCTTCATCAAATTCCGAGTCAGATGAGAGCTCTGAGTCAAACGAGTCTGAATCGAGTGAATCTGAATCTTCTGAGGACTTCACAACCGCACAGCCTCCTACTGGTAGGCCTGCaacaaatcagccaatcactgaCAAGAAAACCACAACAGCAGCACCCGTCACCACTGCAGCAAACATCACAGACTGTGTTACTGTGAATGTGACGAGTCTTCAGATCACCACTGAAAAAAGGGGTGATAACTGAATAGCTTGGAATGTTGCTCAATCCTTTTCAtgcaaaggaaaaagaaaagagagaaTGCTTCCGAATGCTTGATGATTTCTGATGCTATGATGTTTATGTGTTaataatgaaggaaggaaggaaatagTAATGAGTAATCAAACTTTTGAAATTCACAAATAGCAGCACTGTGTTCAAGCATAAAATAAGCACTATTTTCAGtggttttattcacatttattgatGTTATTgctaacattttttttagattgtatAGAAAACAAGGATAACATTTACTAATAAACATTTCTTGCAGAATTAAAAGCTTTTAATCAGgagatagttgacccaaaaattacaatactcactatttactctcccacaaggggtttcaaaatgttttatgagtttctttttgctGTTCTGTTtccgtaaccattgacttcaatagaagAAAAAGCCTACTATGGAAGcgaatggttactggtttccagctttctgtaaaatatcttcttttgtgttcaagtgaAAAAAGAAGCTCGTCACTCATTTGAaataagtaaaggatgagtaaatgatgacagaagttttatctttgggtgaactattttttTGGAATGTCTCTCCATTTTAATGTTCAGTGGGTTTTAATAATGGGTGACCTATAAAGCAAAAACCTGTAAATTAAagttgttttaaagatgttttattgTTCAAGCTTGCAACCTTCAAAAGAAATTTGAAATAAAGATGAAGAATttgaataaatttatttttaattgtatgttGGTGTATTGTATTTGTAGTACAACTGTTTTGACCTGATGTACATTGAAATGGACAAGCTGGAAATAAATTAAAGGTTATGAAACTTTGTCATATTTGTATTTTGTCTCATTTTTGTAGACCTTAGGAAGAGGGAAAATGTACTTTTACAATTTTCTGAAACT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090424-2 No description available

Ensembl:

ensembl_id ENSDARG00000093124

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003867 False 1267 mRNA 0.42 5 15106808 15110872
TCONS_00003869 False 1606 mRNA 0.34 2 15107886 15111334
TCONS_00003868 True 1417 mRNA 0.35 3 15107886 15111334

Neighbor

gene id symbol gene type direction distance location
XLOC_001985 NA coding upstream 10546 15096017 ~ 15096262 (+)
XLOC_001984 si:ch211-95j8.3 coding upstream 14465 15088534 ~ 15092343 (+)
XLOC_001983 NA coding upstream 18282 15087993 ~ 15088526 (+)
XLOC_001982 parm1 coding upstream 30388 15064433 ~ 15076420 (+)
XLOC_001981 NA coding upstream 58026 15047006 ~ 15048782 (+)
XLOC_001987 CR925756.1 coding downstream 75982 15187316 ~ 15190407 (+)
XLOC_001988 sh3bp2 coding downstream 113326 15224660 ~ 15241223 (+)
XLOC_001989 vldlr coding downstream 143678 15255012 ~ 15305767 (+)
XLOC_001990 kcnv2a coding downstream 199477 15310811 ~ 15314151 (+)
XLOC_001991 trappc13 coding downstream 229434 15340768 ~ 15382125 (+)
XLOC_001980 NA non-coding upstream 64060 15036271 ~ 15042748 (+)
XLOC_001973 BX000705.2 non-coding upstream 1175090 13930848 ~ 13931718 (+)
XLOC_001995 NA non-coding downstream 570831 15682165 ~ 15682471 (+)
XLOC_001997 NA non-coding downstream 825972 15937306 ~ 15953470 (+)
XLOC_001998 dre-mir-23b non-coding downstream 843245 15954579 ~ 15954659 (+)
XLOC_001999 dre-mir-27d non-coding downstream 843393 15954727 ~ 15954815 (+)
XLOC_002000 dre-mir-24-1 non-coding downstream 849501 15960835 ~ 15960914 (+)

Expression


Co-expression Network