RNA id: TCONS_00003869


Basic Information

Item Value
RNA id TCONS_00003869
length 1606
RNA type mRNA
GC content 0.34
exon number 2
gene id XLOC_001986
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15106808 ~ 15111334 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATCTAATCGCAACAGGAATTTGCAGGACCAAGCCCCGGTTTACTCACATCCACCAGTATTTAAGCCACAGATGCCAGGGTAAATATATACAGACTGGGACTGTTCTATCACTGGACAAGAACATTTATACAAGGTAACTCACTCGTATCTTGAGTTATGATGCATTTATGGCTTTTTAATCTATATTGGTAACTGAATAATAATCAAATACAAGCACGCAAAtcaaatgctttaaataaaatttttattcttttgtatAGTCATTATTTAACTTAAGCAGAGCGTATtggttttaatgtgttttggtggTTTTGTTTTGTAGGATGAATACTTTGAAGGGATTGATTCTGATGCTTTTTGTTGCGTCTGTCATTTCAAAACCATTGCATTTGTCAAGAAGCAGTTCGGACGAAAATGATTCATCCAAAGCTTCATCAAATTCCGAGTCAGATGAGAGCTCTGAGTCAAACGAGTCTGAATCGAGTGAATCTGAATCTTCTGAGGACTTCACAACCGCACAGCCTCCTACTGGTAGGCCTGCaacaaatcagccaatcactgaCAAGAAAACCACAACAGCAGCACCCGTCACCACTGCAGCAAACATCACAGACTGTGTTACTGTGAATGTGACGAGTCTTCAGATCACCACTGAAAAAAGGGGTGATAACTGAATAGCTTGGAATGTTGCTCAATCCTTTTCAtgcaaaggaaaaagaaaagagagaaTGCTTCCGAATGCTTGATGATTTCTGATGCTATGATGTTTATGTGTTaataatgaaggaaggaaggaaatagTAATGAGTAATCAAACTTTTGAAATTCACAAATAGCAGCACTGTGTTCAAGCATAAAATAAGCACTATTTTCAGtggttttattcacatttattgatGTTATTgctaacattttttttagattgtatAGAAAACAAGGATAACATTTACTAATAAACATTTCTTGCAGAATTAAAAGCTTTTAATCAGgagatagttgacccaaaaattacaatactcactatttactctcccacaaggggtttcaaaatgttttatgagtttctttttgctGTTCTGTTtccgtaaccattgacttcaatagaagAAAAAGCCTACTATGGAAGcgaatggttactggtttccagctttctgtaaaatatcttcttttgtgttcaagtgaAAAAAGAAGCTCGTCACTCATTTGAaataagtaaaggatgagtaaatgatgacagaagttttatctttgggtgaactattttttTGGAATGTCTCTCCATTTTAATGTTCAGTGGGTTTTAATAATGGGTGACCTATAAAGCAAAAACCTGTAAATTAAagttgttttaaagatgttttattgTTCAAGCTTGCAACCTTCAAAAGAAATTTGAAATAAAGATGAAGAATttgaataaatttatttttaattgtatgttGGTGTATTGTATTTGTAGTACAACTGTTTTGACCTGATGTACATTGAAATGGACAAGCTGGAAATAAATTAAAGGTTATGAAACTTTGTCATATTTGTATTTTGTCTCATTTTTGTAGACCTTAGGAAGAGGGAAAATGTACTTTTACAATTTTCTGAAACT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090424-2 No description available

Ensembl:

ensembl_id ENSDART00000188047

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005694 lncRNA upstream 11624 15096017 ~ 15096262 (+) True XLOC_001985
TCONS_00005693 lncRNA upstream 19360 15087993 ~ 15088526 (+) True XLOC_001983
TCONS_00005843 lncRNA upstream 59104 15047006 ~ 15048782 (+) True XLOC_001981
TCONS_00005842 lncRNA upstream 65138 15036271 ~ 15042748 (+) True XLOC_001980
TCONS_00005841 lncRNA upstream 76446 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00003891 lncRNA downstream 420982 15532316 ~ 15533217 (+) True XLOC_001993
TCONS_00005695 lncRNA downstream 570831 15682165 ~ 15682471 (+) True XLOC_001995
TCONS_00003897 lncRNA downstream 691607 15802941 ~ 15813087 (+) True XLOC_001996
TCONS_00005844 lncRNA downstream 825972 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00005845 lncRNA downstream 826170 15937504 ~ 15953470 (+) False XLOC_001997
TCONS_00003866 mRNA upstream 15543 15088534 ~ 15092343 (+) True XLOC_001984
TCONS_00003865 mRNA upstream 31466 15064433 ~ 15076420 (+) True XLOC_001982
TCONS_00003862 mRNA upstream 76466 15024772 ~ 15031420 (+) False XLOC_001979
TCONS_00003870 mRNA downstream 75982 15187316 ~ 15190407 (+) True XLOC_001987
TCONS_00003871 mRNA downstream 113326 15224660 ~ 15241223 (+) True XLOC_001988
TCONS_00003872 mRNA downstream 143678 15255012 ~ 15305141 (+) False XLOC_001989
TCONS_00003874 mRNA downstream 143864 15255198 ~ 15305144 (+) False XLOC_001989
TCONS_00003877 mRNA downstream 143972 15255306 ~ 15305767 (+) False XLOC_001989
TCONS_00003854 other upstream 1176168 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 1213030 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003844 other upstream 2774517 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003843 other upstream 3333367 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003841 other upstream 3609077 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003873 other downstream 143848 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003878 other downstream 187456 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003893 other downstream 491750 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003898 other downstream 843245 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 843393 15954727 ~ 15954815 (+) True XLOC_001999