RNA id: TCONS_00003844


Basic Information

Item Value
RNA id TCONS_00003844
length 117
RNA type rRNA
GC content 0.50
exon number 1
gene id XLOC_001966
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 12333253 ~ 12333369 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCcatagccatatcaccctgcagcccaagaccagttgcttactgaagctaagcagggctgagcctggtcggTGTCTGGATGGGAGAtaacatgggaaaactaggttttTGTTGGaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000181797

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005692 lncRNA upstream 404121 11928089 ~ 11929132 (+) False XLOC_001965
TCONS_00005691 lncRNA upstream 404121 11928089 ~ 11929132 (+) True XLOC_001965
TCONS_00005690 lncRNA upstream 405267 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA upstream 405267 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00005835 lncRNA upstream 667290 11652594 ~ 11665963 (+) False XLOC_001961
TCONS_00005837 lncRNA downstream 965355 13298724 ~ 13304277 (+) False XLOC_001971
TCONS_00005838 lncRNA downstream 965357 13298726 ~ 13304277 (+) True XLOC_001971
TCONS_00005839 lncRNA downstream 2691412 15024781 ~ 15031440 (+) False XLOC_001979
TCONS_00005840 lncRNA downstream 2691623 15024992 ~ 15031440 (+) False XLOC_001979
TCONS_00005841 lncRNA downstream 2691660 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00003842 mRNA upstream 544688 11767791 ~ 11788565 (+) True XLOC_001962
TCONS_00003840 mRNA upstream 831829 11398111 ~ 11501424 (+) True XLOC_001958
TCONS_00003838 mRNA upstream 960712 11355841 ~ 11372541 (+) False XLOC_001957
TCONS_00003839 mRNA upstream 964777 11355884 ~ 11368476 (+) True XLOC_001957
TCONS_00003837 mRNA upstream 1022484 11309814 ~ 11310769 (+) True XLOC_001956
TCONS_00003845 mRNA downstream 183690 12517059 ~ 12730451 (+) True XLOC_001967
TCONS_00003846 mRNA downstream 667001 13000370 ~ 13063743 (+) False XLOC_001968
TCONS_00003847 mRNA downstream 667300 13000669 ~ 13038542 (+) False XLOC_001968
TCONS_00003848 mRNA downstream 667335 13000704 ~ 13064110 (+) True XLOC_001968
TCONS_00003849 mRNA downstream 876211 13209580 ~ 13236012 (+) False XLOC_001969
TCONS_00003843 other upstream 558734 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003841 other upstream 834444 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003830 other upstream 1217283 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 1345951 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003825 other upstream 1509805 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003853 other downstream 1523423 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 1597479 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003873 other downstream 2921813 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003878 other downstream 2965421 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003893 other downstream 3269715 15603084 ~ 15605143 (+) False XLOC_001994