RNA id: TCONS_00003849


Basic Information

Item Value
RNA id TCONS_00003849
length 1476
RNA type mRNA
GC content 0.41
exon number 11
gene id XLOC_001969
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 13209580 ~ 13236012 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACATTGCTAGGCTTTCCCAGAAGTCACTCAGCAGAGGTGAGTTGGCTCAGGTTACGACAAacattgtcacaatcaccagaaAAACACCTGACAAGAACTACAACTCTTCATTCTGTGCCGAACTTCTCTTATCTGCCCGACCCTTCTATAACCGCAGCTGAAGATAGAGATATGTGACCCCTTCCTCTTAAAGTCCACTGACATTGGATCTAAGCAGACAGCAGATCGGGTCGGCTTGTTGAAATGAATGCAGTCCAGTCAAACTCTGTTGTTCAAGTTGGTGCTGGAAATGTTTGCTCCAGGGCTGAGTTTTTCTCTTTACTGAACACCTACAACTGCTTTCTTAAAGACAATACACACCTGCAGCTCACTGTTCATGAgTATGCAGGAAATGTGACATTGGAAGGCATCCTGGTCATTTACTGGGGTGTAAAGAGACCCATTCGGTTACAAATACAAGATGAGAAACAGACATGTTCTAATGAGTCTTCAGTCAAATCACCAGACCCCATCAGTCCACTAGGAAACAAAAGGGGTATGACACGATGGGGAGAATTTGACAACCTTCACAATATTGCTGAACTGGAGGAAGCTGGATCACCTGAAAATCCTACTGAAGACTACATCGTATACGAGACCATGACTTTAAGGCCATCGCGGACCATGCAAATCAATGAAGATAGTTCATATCTGATTCGCACCATGAGCGACGCCTCGCTGGTGAAAATGAGGGTGAAAAGTAAGAAGATGATTGAAAGTCAAAAGAACAGAAACCATCGCTTCTCCATCAATGGACACTTCTACAACTATAAGACATCTGTTTTCACACCATCATTTGGAGCAACCACAAATGTGCACATTAACAGCAGGATGACGACACAAGAGGTCATTACACAACTGCTACACAAATTTAAAGTAGAAAACAGTCCAAATGAATTTTCCCTCTACTGCATTCATCAAACTGGAGAGAAGAGAAGGTTGAGCAGTTCAGACCTGCCCTTGTGGGAGCGTGTTCTACAAGGACCATCAAACTTCATTATGAAGATGTTCCTCATGGATACAGACGAAGAGGAAATTAGTCTTGATGTAGCTCAGTACCTCAATTTAGAAATGCCCATTTTGAAGGTTATCCTGCAGAAACTGGAAGAGCAAGAGAATCTGGAGATACAAAGGATAAAAGCAAAATACCAGAAGGAAAGGAGTCTCTTGTTGCAGTGCTTGAGGAAAAAAATGCCAGTTAAAACCGAGACGACTGTATAAAGAAGTCTTGGCAGTGGGAAACAGTTTTCCATGTGAGATCAACCACGAATgagaaacagtaaaaaaaaaaaaaaaagaaaagtgcatGCAGGACATAGCTTTACACTATTatgtttgtggtgtgagtgtaaataatgtaaaatagatTTTGCATAATGGAACTGTAATTAAACTATTTATCTTGTGAGAGACCAAATAAAATGCTGGTATTTGAG

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007165 signal transduction biological_process
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04390 Hippo signaling pathway
ko04392 Hippo signaling pathway - multiple species

ZFIN:

id description
ZDB-GENE-030616-513 Predicted to be involved in signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Orthologous to human RASSF6 (Ras association domain family member 6).

Ensembl:

ensembl_id ENSDART00000000887

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005692 lncRNA upstream 1280448 11928089 ~ 11929132 (+) False XLOC_001965
TCONS_00005691 lncRNA upstream 1280448 11928089 ~ 11929132 (+) True XLOC_001965
TCONS_00005690 lncRNA upstream 1281594 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA upstream 1281594 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00005836 lncRNA upstream 1543617 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005837 lncRNA downstream 62712 13298724 ~ 13304277 (+) False XLOC_001971
TCONS_00005838 lncRNA downstream 62714 13298726 ~ 13304277 (+) True XLOC_001971
TCONS_00005839 lncRNA downstream 1788769 15024781 ~ 15031440 (+) False XLOC_001979
TCONS_00005840 lncRNA downstream 1788980 15024992 ~ 15031440 (+) False XLOC_001979
TCONS_00005841 lncRNA downstream 1789017 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00003848 mRNA upstream 145470 13000704 ~ 13064110 (+) True XLOC_001968
TCONS_00003846 mRNA upstream 145837 13000370 ~ 13063743 (+) False XLOC_001968
TCONS_00003847 mRNA upstream 171038 13000669 ~ 13038542 (+) False XLOC_001968
TCONS_00003845 mRNA upstream 479129 12517059 ~ 12730451 (+) True XLOC_001967
TCONS_00003842 mRNA upstream 1421015 11767791 ~ 11788565 (+) True XLOC_001962
TCONS_00003851 mRNA downstream 43067 13279079 ~ 13287169 (+) False XLOC_001970
TCONS_00003852 mRNA downstream 47556 13283568 ~ 13286568 (+) True XLOC_001970
TCONS_00003855 mRNA downstream 974655 14210667 ~ 14212801 (+) True XLOC_001974
TCONS_00003856 mRNA downstream 1252613 14488625 ~ 14494239 (+) True XLOC_001975
TCONS_00003857 mRNA downstream 1263189 14499201 ~ 14521190 (+) True XLOC_001976
TCONS_00003844 other upstream 876211 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003843 other upstream 1435061 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003841 other upstream 1710771 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003830 other upstream 2093610 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 2222278 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003853 other downstream 620780 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 694836 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003873 other downstream 2019170 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003878 other downstream 2062778 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003893 other downstream 2367072 15603084 ~ 15605143 (+) False XLOC_001994

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_03261474_03267659.mRNA True 1225 mRNA 0.39 7 CI01000304 3261474 ~ 3268074 (+)