RNA id: TCONS_00003857


Basic Information

Item Value
RNA id TCONS_00003857
length 1418
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_001976
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 14499201 ~ 14521190 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACACATGCGCTGGTGGTCCATCCAAGCCACAGCGTGCTCCTGTCAAGTGTGTGTGCGTCTTGAATCATAATACCATGGATCTCTCTTATCAAGCCATCAGAACTGCGAATCAAGCCAGAGAGGTGgaAGAACTCAGAACAGAAACACGGCGGAGAAATTTGCTTGTTTTGATTTATCATCATTTAATGGAGGAGGGGTATATGGATTCAGCGAAGGCCTTAGAAAAAGAAAGCAGTTTTGGTTTATGCCGTTTTGAAGTGTGTGATAATGTTGACCTGGAGACAGTTCTTATGGAGTATGAAAGTTATTACTTCATAAAGTTTCAGAAATATCCAAAACTAACAAAGAAACTGGCAGAACAAGgagAGAATCGTCGTATAAAGAGTTGTGGTAAAAGAAgTCACACGCTTCCAAGAATCAATTCCATCCAGCGACCTTCATCCAGAAATACCGTAAAGAAGTCTGAATCCAAACTAACTGGAAGAGACTTTAGTAAATCCAGTGACGGGGACCGGCTGACGTCTGCAGACACATTAGGCTTTGGTCTGAATGTGTCTCCTATCATCAGGAACGGGGCAGAAGAGGGAACGCACATGAGAAAGATCGATTACAGGAATCTGATTCAAGATGCAGTTAGAGGTGCTGCTAATGACACATTGCACAATGCAGATTTTACGGAACAGGAGCGCTTGCTGAAACCAGTTAGTGCCCTCATTGGAATGAACAGCGACATGAAGGAACTTGCAGCTGTTATAAGCAGAGATATCTATTTACACAACCCCAACGTGCGCTGGGACGACATTATAGGGCTGGAGGCTGCCAAGCGATTAGTCAAAGAAGCTGTCGTCTACCCCATTAAGTATCCTCAACTGTTTACTGGAATCCTGTCGCCATGGAAGGGCTTGCTCCTGTATGGACCGCCAGGCACTGGAAAAACGATGCTGGCCAAAGCTGTAGCTACAGAGTGTAACAcaacttttttcaacatttctgcaTCCAGTATTGTGAGCAAATGGAGGGGAGACTCTGAGAAGCTGGTTCGGGTTTTGTTTGAGCTGGCAAGATATCACGCCCCATCCACCATTTTCTTGGATGAGCTGGAATCAGTGATGAGCCAGCGAGGGGTTGGCCAAGGAGGTGATCATGAGGGCAGTAGAAGAATGAAAACTGAATTACTTGTTCAGATGGATGGACTGGCTCGATCAAATGATCTTGTATTTGTGCTTGCTGCCTCAAACTTACCTTGGGAGTTGGACCATGCCATGCTTAGAAGACTGGAGAAACGGATACTGGTGAGTCTCCCATCTGCCCCTGCCAGACAAGCCATGATCAGTCATTGGCTTCCTCCAGTCAGTAACACAGGTGGTGTGGAGCTGCGGACAGAGCTGGATTATGACTCGCTGGCACAGGTAACAA

Function

GO:

id name namespace
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008568 microtubule-severing ATPase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-156 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be located in cytoplasm and microtubule. Predicted to be active in nucleus. Orthologous to human KATNAL2 (katanin catalytic subunit A1 like 2).

Ensembl:

ensembl_id ENSDART00000064901

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005837 lncRNA upstream 1194924 13298724 ~ 13304277 (+) False XLOC_001971
TCONS_00005838 lncRNA upstream 1194924 13298726 ~ 13304277 (+) True XLOC_001971
TCONS_00005692 lncRNA upstream 2570069 11928089 ~ 11929132 (+) False XLOC_001965
TCONS_00005691 lncRNA upstream 2570069 11928089 ~ 11929132 (+) True XLOC_001965
TCONS_00005689 lncRNA upstream 2571215 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00005839 lncRNA downstream 503591 15024781 ~ 15031440 (+) False XLOC_001979
TCONS_00005840 lncRNA downstream 503802 15024992 ~ 15031440 (+) False XLOC_001979
TCONS_00005841 lncRNA downstream 503839 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00005842 lncRNA downstream 515081 15036271 ~ 15042748 (+) True XLOC_001980
TCONS_00005843 lncRNA downstream 525816 15047006 ~ 15048782 (+) True XLOC_001981
TCONS_00003856 mRNA upstream 4962 14488625 ~ 14494239 (+) True XLOC_001975
TCONS_00003855 mRNA upstream 286400 14210667 ~ 14212801 (+) True XLOC_001974
TCONS_00003851 mRNA upstream 1212032 13279079 ~ 13287169 (+) False XLOC_001970
TCONS_00003852 mRNA upstream 1212633 13283568 ~ 13286568 (+) True XLOC_001970
TCONS_00003849 mRNA upstream 1263189 13209580 ~ 13236012 (+) False XLOC_001969
TCONS_00003858 mRNA downstream 425813 14947003 ~ 14949367 (+) True XLOC_001977
TCONS_00003860 mRNA downstream 442708 14963898 ~ 15017639 (+) False XLOC_001978
TCONS_00003859 mRNA downstream 442708 14963898 ~ 15017639 (+) False XLOC_001978
TCONS_00003861 mRNA downstream 461787 14982977 ~ 15017039 (+) True XLOC_001978
TCONS_00003862 mRNA downstream 503582 15024772 ~ 15031420 (+) False XLOC_001979
TCONS_00003854 other upstream 567483 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 604345 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003844 other upstream 2165832 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003843 other upstream 2724682 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003841 other upstream 3000392 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003873 other downstream 733992 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003878 other downstream 777600 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003893 other downstream 1081894 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003898 other downstream 1433389 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 1433537 15954727 ~ 15954815 (+) True XLOC_001999

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_03984177_03996203.mRNA True 2026 mRNA 0.44 15 CI01000304 3984177 ~ 3996401 (+)