RNA id: TCONS_00003860


Basic Information

Item Value
RNA id TCONS_00003860
length 5875
RNA type mRNA
GC content 0.48
exon number 24
gene id XLOC_001978
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 14963898 ~ 15017639 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgatTTCCTGTGTAAGGATGGCAGTAAGTGTGTGGGGAAAGATTTAGTGTGTGACGGTCGCTCTCACTGCTTTGATGGATCAGATGAGGATGAATGTCCCACTATGGTTGCTGAAAACTCAAACTCAGGACCACTGAGGTGTCGTGTGGGCTCTAAACTCTGTAATGATGGGCGCCAGTGTGTCCTGCACGATCATGTGTGTGATGGAGAGAAAGACTGTGAAGATGGATCTGATGAGCAGGGCTGTCCAAACCGCTGTAAAGCAGGTAAAACTCATGAAAATGACCCATGAGCTGATTTATGAGATTTAACAGTTGAGGAACTGACATATACCAATGTTTGCTCCTAGATCAGTTCCGCTGTGCTCATGGGAGGATGTGTATCGACAAAAAGCAGGTGTGTGACGGCACCCCTCACTGTCAGGACCGCTCTGATGAACTGAACTGTTTCACTCAATCACATGACTGCAGACATCAGTGTGATAATAAAACTCGCTGCATCCCTGAGAGCTTCCTCTGTGACGGAGAGAGAGACTGTGTAGATGCCACTGATGAAGCTAACTGCCCTGagattaaaaatgtggaaaaaaatgtgGTCACACGAAACACAGACCGCTCAGATGTTCAGCCTCCACCTCCAGTCTGTAAAAGACCCTCAATGTTGTGTCCTGGAACATCACTCTGCATTTCCCAGACACGGCTGTGTGACGGAAAACTCGATTGTCCAGATGGTTCTGATGAAGTTTCCTGTGTCCACGCTTGTTCTAATCCTGGTGACTTCCTGTGTAAGGACAGGAGGAAGTGTGTTGATGGAAATCAGGTGTGCGACGGTCGATCTGACTGCTTTGATGGCTCTGATGAGATGGCTTGTTACTTGTCAGCCAGAACCTCAAATAAAGTGCCACTGAAGTGTCGTGTGGGCTCTAAACCCTGTAATGATGGGCGTCAGTGTGTCCTGCATGATCATGTGTGTGATGGAGAGAAGGATTGTAAGGATGGGTCAGATGAGCGGGGCTGTCCAAACCGCTGTAAAGCAGATCAGTTCCGCTGTGCTCATGGGAGGATGTGCATAGACAAAAAGCAGGTGTGTGACGGCACCCCTCAGTGTCAGGACCGCTCTGATGAACTGAACTGTTTCACTCGATCACACGACTGCAAACATCAGTGTGATAATAAAACTCGCTGCATCCCAGAGAGCTTCCTCTGTGACGGAGAGAAAGACTGTGTAGATGCCACTGATGAAGCTAACTGCCCTTCAATCCCTGACGCATCCAATGCAGACCCTTTAAAAACATTAGGCTGCAGAAGCCCGTCTATGTTTTGCAAAGAAACATCAAAGTGCATGCCAGAATCTCAGCTCTGTGATGGAAAGGTGGACTGTCCCAGTGGAGCCGATGAGCAGTTCTGCATATATTCATGTTCAGATCCAGACCATTTTCTGTGCAAGGACAAGCGGAAGTGTGTCCACAAAGCTGTTGTGTGTGATGGTTACTCACACTGTGCTGATGGTTCTGATGAGTATCAGTGCCCGACTTGTGCTTTGCAGTGCGACCAAAAGACTGTTTGTCTGACTAAACAGCAGCGCTGTGATGGAAAACCCGACTGTAGAGATGGTTCAGATGAGAAGGATTGTTACACTGGTGGTGTGATTGCAAGTACTTCGTTACCTCTGAGATGTCCTCTGGGGTCCAAACCTTGCATGGATGGCAAAGAGTGTGTTCTGCTGGACCATCTGTGTGATGGAGAGAAAGACTGCAAAGATGGATCCGATGAGAGGACCTGTGAgcgtaaatgtaaaaaagGCCAGTTCCAGTGTTCGCATGGCAGAAAGTGCATAGACATGAAGTTTGTATGTGACGGCACACCTCAGTGCCAGGACCGATCAGATGAAGCCAACTGCATGAAGCTCTCAGATGAGTGTAGACACCAGTGTGACAATAAAACCCGCTGCGTTCCTGAAACGTTCCTCTGTGACGGGGAAAAAGACTGCGTGGATGGCACCGACGAAGCCAACTGCGTTGTAGAGCCTTGTTCGGGTGATCGTTTCCAGTGCAGTAATGGTCAGTGTGTTGCTCTGAGTCTCCGCTGTGATGGGTATGCAGACTGTCGTGATCACACAGATGAGAAGGGGTGTCCTCAGCCTCCACACTGTCCTCTGGATCATCGCTGCCCTCACACTCATGAGTGTCTGCTGAAAGAGTGGCTCTGTGATGGAGACAAGGACTGCAGCGACGGCTCTGATGAGAGGAACTGCAAAGCGACTCCGCTGAAGTGTGGTGAGTTCCAGTGGTCGTGTGCATCTAGAACTCAATGCATCGCAAAGACCTGGAGGTGTGATGGCATGAAAGACTGCCAGGATGAGAGCGATGAATCTGGATGTGGTCAAACGAAATGCCCAACGCACTTGTTCCAGTGTGGAAGTGGGGAGTGTATGGACCCAGATTTGGTGTGCAACAAGGCGTCAGACTGTGCGGACGGGTCTGATGAGGGCGTGGGGTGTCTGAAGAACAACTGCTCCAGTCCTGGAAGCCCATCATGCCAACACTACTGCATTAACACTCCACATGGAGCAAGATGCGGCTGTAAGACTGGCTTCAAGCTTCACTCTGACGGGTTATCCTGCGTTGACATAGATGAGTGTAAAGAGATTCAGCCAGCTGCCTGCAGTCATAAATGCTTTAACAGACTGGGCTCCTACATCTGTCAGTGCCACCCTGAATTTTTACTGGAGCCTGATGGTCACAGCTGCAAAACTGCTGATGAGCCCAGTCTTTTAGTCTCTGAACAGGATGAGCTGTTGAATATGGGTCTGCGAAGCTTCAGTATTCAGACTCTTACTGCTCCTGGACGGAAACCCATCTTTTCTCTGGACTATGATCTGAGGGAGAGAAGGGTTTACTGGGCCAGTCTGGAGGATGAGAGCATCAAATATGCCTTCCACGGAGAAAAGGACAATACTGGAACTATTGtcaaagGTGTGAAGTCAGACTGCATTGCCATTGACTGGATGGGAAGGAATCTTTACTGGGTGGATGGAGTTGCTGGGCAGATTCTAGCTGTGAGACTGACCAACAGTGTTGTACATCCACAAAACTATGTTGTAGTTCTGGATGAGGATCTGAAGCAGCCAAACTCACTTGTGCTGTTGCCTCAGAAAGGGATCATGTTGTGGTCACAGGTTGGAGGTCAAGCACAGATCGGACGCTCCAGCATGGACGGATCAGACAGGAGAGCAGTGATCAGACGTGGACTCAACTGGCCTGTCAGTGTGACGGTGGACATTCTGACTGACAGACTCTACTGGACAGACAAGAAGCTCGGGTGTATTGGCTCAGCCACACTGGATGGAGAAAACATAAGGtttcTCCAGCTGTCTCATATGCCTAGTCCGTTATCCATGGCTGTGTTTAATGACATGATCTACTGGTCTGACACTCAGAGAAGATCTGTTCAAGGAGCCAATAAACTGACTGGCAAGAACCGCAAAGTTTTTCTCAAAAGACCTGGACAGCCATTTGCCCTTAAAGTTGTCCACCCTCTTCAGCAGCCCAATGTCCCGAACCCCTGTCAAAGTCTCCACTGTTCTCACGTGTGTCTGCTGGCTCCAGGACTCAAAGCGGTGTGTCGCTGTCCCACCAGAGCTCCTCTGGCTGCGGACGGATTGACTTGTGGTTCGACTTTGGATGATTCCTCCTCTTACCTTATGTTACTGTCTCTCACCACGATCACACAGATCTTTACTAAGAGCATGCAGTCTGAAGTTGGGCTGAAGCAGTGGCCCAATCACCGATCTTTGCCTCTGCTTGGTGTTTCTGAAGCCTCTGATTTCGACATGCTTCTCCAGGACCGAAGTATCACTCTAGCAGACGCCTCTGTGGGCTCTGTCTCTCAGCTTGGCCTGCGCAGCTCTGGCTTCTCTCCAATCGGACTCGTCCTCCAACTGAAGGGGGACATCCTGTCTGCTCTGGCTCTGGACTGGGTCACCAAAAACCTCTACTGGAGCAGCATGAAGAGGCCGGAGCTGTTTGTTACATCTCCTGGAGGGAAGCTCACAGCAGTGGTTCTGCAGGCTGAGCTTGCAGGCACCGTCTCTATTGCTCTGCACCCCCCTTCAGGTCGGATGTGTTTCACTGCTGTGGGACGCAGGGGTGCTGATATGCTGCCCCAAGTGGACTGCGCTCACATGGACGGGGCAAACCGAACCCGGCTCTGGAGTAAAGCAAAAATGCCAGTGTCACTAGCCTTGTCGGAGAAGGGGAACACGTTGTATTGGGCTGATATTGggAGTGATTTGATTTGCTCTGTTAACATCGATGGCTCTAATTATAAGGAGTTCAGCACCGGTTCTGAATTTATGGTGTCTTTTGCTCGTATTGACAACATCTACTTCTGGATCACACTGGACAACGGTACTTCTCAACTCTGGTACTCCGATGGTTTACAGCCCAAGCAGATGTGGTTTGAGGTGAAGACGAGTGTTATTGAGCTGAAGGCTTACAGCAGGTCCAGTCAGAAAGGATTTAATGCATGCTCCATGAGCAACGGGGGTTGCAGTCATCTTTGTTTGCCAAATCCTGGTGGTCGCACATGTCGCTGCGCTCAGGACTATCTATCGGTGAACAACACCAAATGTGTGTCCAGCCTCAAGTGTCCCGTGGGTTTAAAAGCCTGTAGAGATAGGCTCAAGTGTATCCCTGTGGCAAAATTCTGTGATCAGGTCCCAGACTGCCAGGATGCGTCCGATGAGGAGTGTGACCGTGTGAAAACCAAACCAGGGGTGAAATCCAAATCTGGGCCTGGCTCTCTCGACTCTGCTGTTGAACTTTCTCCATCTTCAGAAAATGGTGTTGTGGTGGAGAATGTGGGCAGTGTGTCATGTGCTGCCGAGCAATGCAGTGCTCATGGGAAGTGTGTAAGTGTGAACGGTGTGCTGGCGTGTGAATGTGACAAAGGCTTCAGCGGAGATAACTGTCAGAACACCAAATCCAGCGGCACCGCTATCGCTCTCACACTCATGTTTCTCTTCGGAGGAGCTCTAATGGTCGCCATCTTCCTCATGAGAAgAAGGGCACGAGCAGCAAGGGAAGAGTCGACTGAAAAAGAGAATCTAGTGACTGACGTGAAAGAGCACTTGACCTTCTCAGCTCAGAACTTTGCTAATGAGCTGTATGATCCAGAAGAGGTTCCTATTTCTTCAATCATCACCACTCCTGTTGTCagttaaaacatttatataatttttaattttcaataaaaaataaatattaattgcaAGATATAGTGTTGTTCACTTCCTGGTCAGAAAGATATTACATGGAAAAGGGGCTTTAGTGCTTTTCGCATAAATTACATGTTGAAATGTCAGTTGTTTGAaatttttaggaaacatttatgcAGTACTTCAATACAGAAACCACACAATGTACATGCCTTAGGCTGGAGTCATTTCAGTCTGTTTCAATGCACAAGCATTTGATTATGCAAATTCTACTTTCAATACTCTACTTCCAGCATCTCCCCCTTTGTGAAACCTAACCAGGAGGAAGAGCCAGTGAATCAATGTCTTTATCACAGTTTTGGGGAGAGAAAAAAttaggatagcgctcctcctacttcagtctccacatcaaagttcataaaaccaaaggtcaaggtgctccaggattggccagcccattcaCCAGATATGAatgttattgagcatgtctggggtaagatggaggaggaggcattgaagatgaatccagtgAATCTTGCTGAACTCTGGGAGGGCTGCgtaaacgctttctttgccattccagatgactttattaagttacttgagtcattgcagagatgtattgatgcagtcctccaagctcatgagtatcaaaca

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6015 Predicted to enable hormone binding activity. Acts upstream of or within cranial skeletal system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in apical plasma membrane.

Ensembl:

ensembl_id ENSDART00000187363

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005837 lncRNA upstream 1659621 13298724 ~ 13304277 (+) False XLOC_001971
TCONS_00005838 lncRNA upstream 1659621 13298726 ~ 13304277 (+) True XLOC_001971
TCONS_00005692 lncRNA upstream 3034766 11928089 ~ 11929132 (+) False XLOC_001965
TCONS_00005691 lncRNA upstream 3034766 11928089 ~ 11929132 (+) True XLOC_001965
TCONS_00005689 lncRNA upstream 3035912 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00005839 lncRNA downstream 7142 15024781 ~ 15031440 (+) False XLOC_001979
TCONS_00005840 lncRNA downstream 7353 15024992 ~ 15031440 (+) False XLOC_001979
TCONS_00005841 lncRNA downstream 7390 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00005842 lncRNA downstream 18632 15036271 ~ 15042748 (+) True XLOC_001980
TCONS_00005843 lncRNA downstream 29367 15047006 ~ 15048782 (+) True XLOC_001981
TCONS_00003858 mRNA upstream 14531 14947003 ~ 14949367 (+) True XLOC_001977
TCONS_00003857 mRNA upstream 442708 14499201 ~ 14521190 (+) True XLOC_001976
TCONS_00003856 mRNA upstream 469659 14488625 ~ 14494239 (+) True XLOC_001975
TCONS_00003855 mRNA upstream 751097 14210667 ~ 14212801 (+) True XLOC_001974
TCONS_00003851 mRNA upstream 1676729 13279079 ~ 13287169 (+) False XLOC_001970
TCONS_00003862 mRNA downstream 7133 15024772 ~ 15031420 (+) False XLOC_001979
TCONS_00003863 mRNA downstream 7367 15025006 ~ 15031420 (+) False XLOC_001979
TCONS_00003864 mRNA downstream 7383 15025022 ~ 15031229 (+) False XLOC_001979
TCONS_00003865 mRNA downstream 46794 15064433 ~ 15076420 (+) True XLOC_001982
TCONS_00003866 mRNA downstream 70895 15088534 ~ 15092343 (+) True XLOC_001984
TCONS_00003854 other upstream 1032180 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 1069042 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003844 other upstream 2630529 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003843 other upstream 3189379 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003841 other upstream 3465089 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003873 other downstream 237543 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003878 other downstream 281151 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003893 other downstream 585445 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003898 other downstream 936940 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 937088 15954727 ~ 15954815 (+) True XLOC_001999

Expression Profile

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