RNA id: TCONS_00003851


Basic Information

Item Value
RNA id TCONS_00003851
length 1398
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_001970
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 13279079 ~ 13287169 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTACAAGAGAACAAACAGTCCGTCAGACCGGTGAGGGGAATGAGATGAGTACATCAGGTTTCTGACCCCTCCATGGAAGAGGCCAGCGATGAGGGGCTTTTACTCCAAGCTGGACTCCTCATCTATAGGTATGGCTGTGCCTCTGAATCTGGCCGTGGAGACAGAGAAAGCGCAGGCGCTCCTCCAGACCTTCAGCACTGCCTCTCTGTTCGCCAGCGCAGGCCTAGGCGCTTTCTGTTTCGTCGCTGACCACTTCCTGACGCTACCCTTCATCCAGCATCATCTGTGGCTCAGGGCTCTTTTCGATAACACTGTCCACGCCATCATTGGTCTGTGGTCTTGGGCCATCGTGATCGGCTTGAGGAAGAAAAGTGACTTCTATGAAGTCATCCTGGCCGGGTTTCTGGCCTCGGTCATTGACCTGGACCACTTCTACATGGCTGGATCATTGTCAATCAAAGCTGCTGTGAATCTGCCACACAGGCCTCCTCTGCACTGCTCTACCTTGATCCCAGCGCTCTGCTTCTCTCTGCGCCTCCTCATGTGGGCCTGCCGGCTCAAAGACTCCTGGTGCTCTCTGCCCTGGATGCTTTTCATCTCGCTGACATCGCACCACATCCGGGACGGGGTTCGCCACGGCCTCTGGGTCTGTCCATTCGGCAACACAGCACCAATCTCATACTGGCTGTACGTAACCATTACAGCCACACTCCCTCATCTGTGCTCAGTGCTCATGTATCTGACCGGCACCAGAGACATGATCTCCACCAAACACGGCGTCGCTATTGACGTCTGAGACAATCTATTTCGCTTCCTTTCTTTACTTTTCCCTGCAAAACGTGAAGCTGGAAATATCGCCGTTGGCTCTGCATCTTTGCCATTCCTACTTTATTCCTTCTTGAGAAATTGTGTCAGTGTGTTTGATACTTCTGACTGCTGTAGACGTTCAGGTATCAGTGTGAAATCAGGTTACGTCGACTGTGGAGACTGTGAATAGTTTGGTGCGGTGTAGTTCAGGGTTGGGTGATAAATCTTTTCAGTATGAATGTCTGTGTTCCTAATagttaataatttattacattttgtcaCTAATACAATagtaaatagcactatttgaGTGATAAGTAAAtagattgtttattgttttgaatcAGTATAGGTAATAGTAAAGGTGTGGTCACTGGTGAAATGTTGGGATAATCTTGCCATTACTTGAAATTTCCAAGTGTAGAGATTTCTGTTGAAATAACCAGATTTTACCAATGGAAATTTGCAGAACAATATGTCTGAACCATAACAGTTTTTCTTCTGAAGGTATATAACTGTATAGATGACAATATTAGCGTCCTTGTCAATGCAACGGCAACATTCTTTTTATAAAAAATGATACTCTGCAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-546 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM267 (transmembrane protein 267).

Ensembl:

ensembl_id ENSDART00000135082

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005692 lncRNA upstream 1349947 11928089 ~ 11929132 (+) False XLOC_001965
TCONS_00005691 lncRNA upstream 1349947 11928089 ~ 11929132 (+) True XLOC_001965
TCONS_00005690 lncRNA upstream 1351093 11926073 ~ 11927986 (+) False XLOC_001964
TCONS_00005689 lncRNA upstream 1351093 11926073 ~ 11927986 (+) True XLOC_001964
TCONS_00005836 lncRNA upstream 1613116 11652749 ~ 11665963 (+) True XLOC_001961
TCONS_00005837 lncRNA downstream 11555 13298724 ~ 13304277 (+) False XLOC_001971
TCONS_00005838 lncRNA downstream 11557 13298726 ~ 13304277 (+) True XLOC_001971
TCONS_00005839 lncRNA downstream 1737612 15024781 ~ 15031440 (+) False XLOC_001979
TCONS_00005840 lncRNA downstream 1737823 15024992 ~ 15031440 (+) False XLOC_001979
TCONS_00005841 lncRNA downstream 1737860 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00003849 mRNA upstream 43067 13209580 ~ 13236012 (+) False XLOC_001969
TCONS_00003850 mRNA upstream 56214 13209690 ~ 13222865 (+) True XLOC_001969
TCONS_00003848 mRNA upstream 214969 13000704 ~ 13064110 (+) True XLOC_001968
TCONS_00003846 mRNA upstream 215336 13000370 ~ 13063743 (+) False XLOC_001968
TCONS_00003847 mRNA upstream 240537 13000669 ~ 13038542 (+) False XLOC_001968
TCONS_00003855 mRNA downstream 923498 14210667 ~ 14212801 (+) True XLOC_001974
TCONS_00003856 mRNA downstream 1201456 14488625 ~ 14494239 (+) True XLOC_001975
TCONS_00003857 mRNA downstream 1212032 14499201 ~ 14521190 (+) True XLOC_001976
TCONS_00003858 mRNA downstream 1659834 14947003 ~ 14949367 (+) True XLOC_001977
TCONS_00003860 mRNA downstream 1676729 14963898 ~ 15017639 (+) False XLOC_001978
TCONS_00003844 other upstream 945710 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003843 other upstream 1504560 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003841 other upstream 1780270 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003830 other upstream 2163109 11115854 ~ 11115970 (+) True XLOC_001954
TCONS_00003827 other upstream 2291777 10972810 ~ 10987302 (+) False XLOC_001952
TCONS_00003853 other downstream 569623 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003854 other downstream 643679 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003873 other downstream 1968013 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003878 other downstream 2011621 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003893 other downstream 2315915 15603084 ~ 15605143 (+) False XLOC_001994

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_03278369_03283013.mRNA True 2906 mRNA 0.31 4 CI01000304 3276308 ~ 3283183 (+)