RNA id: TCONS_00005693


Basic Information

Item Value
RNA id TCONS_00005693
length 534
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id XLOC_001983
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15087993 ~ 15088526 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgtaaaacAATAACCAGGTTGTGTGGCTGCAGTTTGTGCAATAATCACACAACTATTTCAATTACAACATCGGCTCATTAGGACTTTCCAATAATAACATCATAAAAACTGTGGAATAAACCTCAGACTTCTGGTGAACCCAAAAAATACCTGTTACACCCAACAAAATATAACCAAAATATGACAGATGTCTTCAACAGCTTTCTGACTACATAGTTTTCTATAAACTCGATATTGTGTAACTATCATATTAAAAATTATTGTAGATCTTATCGTGAGGAACGTTTACCACATCTGATCTTATTGCAACATATAATATCTCAATTATGACTCTGTGTATATTTCACAGATGAGTGAAAACCACTTGTGTAACCAGGAATAAGACGAAAGGTGTTATTAAGTGTTTAATTAACCAAAAGGGAAAGCAGAAAttcatcatttttattatgttttgttgaTTAACGACATCATAGCATTACAAGCCTCTTCTGATTGGTTGGATAAATAATTTATATGCACTCTGAAGGTTGCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005843 lncRNA upstream 39211 15047006 ~ 15048782 (+) True XLOC_001981
TCONS_00005842 lncRNA upstream 45245 15036271 ~ 15042748 (+) True XLOC_001980
TCONS_00005839 lncRNA upstream 56553 15024781 ~ 15031440 (+) False XLOC_001979
TCONS_00005840 lncRNA upstream 56553 15024992 ~ 15031440 (+) False XLOC_001979
TCONS_00005841 lncRNA upstream 56553 15025029 ~ 15031440 (+) True XLOC_001979
TCONS_00005694 lncRNA downstream 7491 15096017 ~ 15096262 (+) True XLOC_001985
TCONS_00003891 lncRNA downstream 443790 15532316 ~ 15533217 (+) True XLOC_001993
TCONS_00005695 lncRNA downstream 593639 15682165 ~ 15682471 (+) True XLOC_001995
TCONS_00003897 lncRNA downstream 714415 15802941 ~ 15813087 (+) True XLOC_001996
TCONS_00005844 lncRNA downstream 848780 15937306 ~ 15953470 (+) False XLOC_001997
TCONS_00003865 mRNA upstream 11573 15064433 ~ 15076420 (+) True XLOC_001982
TCONS_00003862 mRNA upstream 56573 15024772 ~ 15031420 (+) False XLOC_001979
TCONS_00003863 mRNA upstream 56573 15025006 ~ 15031420 (+) False XLOC_001979
TCONS_00003864 mRNA upstream 56764 15025022 ~ 15031229 (+) False XLOC_001979
TCONS_00003860 mRNA upstream 70354 14963898 ~ 15017639 (+) False XLOC_001978
TCONS_00003866 mRNA downstream 8 15088534 ~ 15092343 (+) True XLOC_001984
TCONS_00003867 mRNA downstream 18282 15106808 ~ 15110872 (+) False XLOC_001986
TCONS_00003869 mRNA downstream 19360 15107886 ~ 15111334 (+) False XLOC_001986
TCONS_00003868 mRNA downstream 19360 15107886 ~ 15111334 (+) True XLOC_001986
TCONS_00003870 mRNA downstream 98790 15187316 ~ 15190407 (+) True XLOC_001987
TCONS_00003854 other upstream 1156275 13930848 ~ 13931718 (+) True XLOC_001973
TCONS_00003853 other upstream 1193137 13856792 ~ 13894856 (+) True XLOC_001972
TCONS_00003844 other upstream 2754624 12333253 ~ 12333369 (+) True XLOC_001966
TCONS_00003843 other upstream 3313474 11774405 ~ 11774519 (+) True XLOC_001963
TCONS_00003841 other upstream 3589184 11498693 ~ 11498809 (+) True XLOC_001959
TCONS_00003873 other downstream 166656 15255182 ~ 15287900 (+) False XLOC_001989
TCONS_00003878 other downstream 210264 15298790 ~ 15304367 (+) True XLOC_001989
TCONS_00003893 other downstream 514558 15603084 ~ 15605143 (+) False XLOC_001994
TCONS_00003898 other downstream 866053 15954579 ~ 15954659 (+) True XLOC_001998
TCONS_00003899 other downstream 866201 15954727 ~ 15954815 (+) True XLOC_001999